Accurate and fast small \(p\)-value estimation for permutation tests in high-throughput genomic data analysis with the cross-entropy method

DOI10.1515/sagmb-2021-0067zbMath1530.92167MaRDI QIDQ6144029

Weiping Shi, Yang Shi, Huining Kang, Mengqiao Wang, Ji-Hyun Lee, Hui Jiang

Publication date: 5 January 2024

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

zbMATH Keywords

importance samplingMonte Carlo simulation\(p\)-valuepermutation testgenomic data analysisthe cross-entropy method

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Cites Work

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• Improved cross-entropy method for estimation
• How accurate are the extremely small \(P\)-values used in genomic research: an evaluation of numerical libraries
• Bootstrap quantile estimation via importance resampling
• Optimization of computer simulation models with rare events
• General properties and estimation of conditional Bernoulli models
• The cross-entropy method for combinatorial and continuous optimization
• Adaptive resampling algorithms for estimating bootstrap distributions
• Significance analysis of microarrays applied to the ionizing radiation response
• Efficient p-value evaluation for resampling-based tests
• Handbook of Monte Carlo Methods
• Fast approximation of small p-values in permutation tests by partitioning the permutations
• How to Deal with the Curse of Dimensionality of Likelihood Ratios in Monte Carlo Simulation
• Weighted finite population sampling to maximize entropy
• Testing Statistical Hypotheses
• Introducing Monte Carlo Methods with R