Unlabelled landmark matching via Bayesian data selection, and application to cell matching across imaging modalities

DOI10.1007/S11222-023-10259-7MaRDI QIDQ6172162zbMATH OpenFDO

Authors Jessica E. Forsyth, Ali H. Al-Anbaki, Berenika Plusa, S. L. Cotter

Publication date 16 August 2023

Published in Statistics and Computing (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://arxiv.org/abs/2205.15167

zbMATH Keywords

landmark matchingBayesian data selectionmulti-modal image analysis

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10)

Abstract: We consider the problem of landmark matching between two unlabelled point sets, in particular where the number of points in each cloud may differ, and where points in each cloud may not have a corresponding match. We invoke a Bayesian framework to identify the transformation of coordinates that maps one cloud to the other, alongside correspondence of the points. This problem necessitates a novel methodology for Bayesian data selection; simultaneous inference of model parameters, and selection of the data which leads to the best fit of the model to the majority of the data. We apply this to a problem in developmental biology where the landmarks correspond to segmented cell centres, where potential death or division of cells can lead to discrepancies between the point-sets from each image. We validate the efficacy of our approach using in silico tests and a microinjected fluorescent marker experiment. Subsequently we apply our approach to the matching of cells between real time imaging and immunostaining experiments, facilitating the combination of single-cell data between imaging modalities. Furthermore our approach to Bayesian data selection is broadly applicable across data science, and has the potential to change the way we think about fitting models to data.

Recommendations

• Bayesian matching of unlabeled marked point sets using random fields, with an application to molecular alignment
• Bayesian matching of unlabeled point sets using Procrustes and configuration models
• Stochastic labelling of biological images

Cites work

• scientific article; zbMATH DE number 54157 (Why is no real title available?)
• Bayesian alignment using hierarchical models, with applications in protein bioinformatics
• Bayesian data assimilation in shape registration
• Bayesian model selection and statistical modeling.
• Bayesian protein structure alignment
• Behavior of the NORTA method for correlated random vector generation as the dimension increases
• Generalized Procrustes analysis
• Generating random correlation matrices based on partial correlations
• Generating random correlation matrices based on vines and extended onion method
• Generation of three-dimensional random rotations in fitting and matching problems
• Informed proposals for local MCMC in discrete spaces
• Landmark matching via large deformation diffeomorphisms
• Learning landmark geodesics using the ensemble Kalman filter
• Markov chains for exploring posterior distributions. (With discussion)
• On algorithms for permuting large entries to the diagonal of a sparse matrix
• Optimization by simulated annealing
• Outlier analysis
• Shapes and diffeomorphisms
• Statistical Analysis of Unlabeled Point Sets: Comparing Molecules in Chemoinformatics
• Statistical shape analysis. With applications in R
• Weak convergence and optimal scaling of random walk Metropolis algorithms

Cited in

(1)

• Bayesian matching of unlabeled marked point sets using random fields, with an application to molecular alignment

This page was built for publication: Unlabelled landmark matching via Bayesian data selection, and application to cell matching across imaging modalities

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q6172162)