Nonlinear dynamics of DNA systems with inhomogeneity effects

DOI10.1016/J.CJPH.2018.07.006arXiv1707.02382OpenAlexW2962695603MaRDI QIDQ6197352FDOQ6197352

Authors: Joseph Brizar Okaly, Alain Mvogo, R. L. Woulaché, Timoléon C. Kofané 

Publication date: 19 March 2024

Published in: Chinese Journal of Physics (Taipei) (Search for Journal in Brave)

Abstract: We investigate the nonlinear dynamics of the Peyrard-Bishop DNA model taking into account site dependent inhomogeneities. By means of the multiple-scale expansion in the semi-discrete approximation, the dynamics is governed by the perturbed nonlinear Schrodinger equation. We carry out a multiple-scale soliton perturbation analysis to find the effects of the variety of nonlinear inhomogeneities on the breatherlike soliton solution. During the crossing of the inhomogeneities, the coherent structure of the soliton is found stable. The global shape of the inhomogeneous molecule is merged with the shape of the homogeneous molecule. However, the velocity, the wavenumber and the angular frequency undergo a time-dependent correction that is proportional to initial width of the soliton and depends on the nature of the inhomogeneities.

Full work available at URL: https://arxiv.org/abs/1707.02382

Recommendations

• Nonlinear molecular excitations in a completely inhomogeneous DNA chain
• Soliton excitations in an inhomogeneous DNA molecular chain
• Perturbed soliton excitations in the DNA double helix
• DNA Torsional Solitons in the Presence of Localized Inhomogeneities
• Soliton propagation in homogeneous and inhomogeneous models for DNA torsion dynamics

zbMATH Keywords

DNAbreather solitonnonlinear inhomogeneitiessoliton perturbation technique

Mathematics Subject Classification ID

Genetics and population dynamics (92Dxx) Partial differential equations of mathematical physics and other areas of application (35Qxx) Physiological, cellular and medical topics (92Cxx)

Cites Work

• Title not available (Why is that?)
• Nonlinear dynamics and statistical physics of DNA
• Compacton anti-compacton pair for hydrogen bonds and rotational waves in DNA dynamics
• Perturbed soliton excitations in the DNA double helix
• A perturbation theory for soliton systems
• Nonlinear molecular excitations in a completely inhomogeneous DNA chain
• Nonlinear DNA dynamics: Hierarchy of the models
• Long-range interactions between adjacent and distant bases in a DNA and their impact on the ribonucleic acid polymerase-DNA dynamics
• Soliton Evolution in the Presence of Perturbation
• Nonlinear dynamics of damped DNA systems with long-range interactions
• Semi-discrete breather in a helicoidal DNA double chain-model
• Solitary waves in an inhomogeneous chain of \(\alpha\)-helical proteins

Cited In (1)

• Forming localized waves of the nonlinearity of the DNA dynamics arising in oscillator-chain of Peyrard-Bishop model

This page was built for publication: Nonlinear dynamics of DNA systems with inhomogeneity effects

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q6197352)