Nonlinear dynamics of DNA systems with inhomogeneity effects

DOI10.1016/J.CJPH.2018.07.006MaRDI QIDQ6197352zbMATH OpenOpenAlexFDO

Authors Joseph Brizar Okaly, Alain Mvogo, R. L. Woulaché, Timoléon C. Kofané

Publication date 19 March 2024

Published in Chinese Journal of Physics (Taipei) (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1707.02382

zbMATH Keywords

breather solitonDNAnonlinear inhomogeneitiessoliton perturbation technique

Mathematics Subject Classification ID

Partial differential equations of mathematical physics and other areas of application (35Qxx) Physiological, cellular and medical topics (92Cxx) Genetics and population dynamics (92Dxx)

Abstract: We investigate the nonlinear dynamics of the Peyrard-Bishop DNA model taking into account site dependent inhomogeneities. By means of the multiple-scale expansion in the semi-discrete approximation, the dynamics is governed by the perturbed nonlinear Schrodinger equation. We carry out a multiple-scale soliton perturbation analysis to find the effects of the variety of nonlinear inhomogeneities on the breatherlike soliton solution. During the crossing of the inhomogeneities, the coherent structure of the soliton is found stable. The global shape of the inhomogeneous molecule is merged with the shape of the homogeneous molecule. However, the velocity, the wavenumber and the angular frequency undergo a time-dependent correction that is proportional to initial width of the soliton and depends on the nature of the inhomogeneities.

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Cites work

• A perturbation theory for soliton systems
• Compacton anti-compacton pair for hydrogen bonds and rotational waves in DNA dynamics
• scientific article; zbMATH DE number 1258146 (Why is no real title available?)
• Long-range interactions between adjacent and distant bases in a DNA and their impact on the ribonucleic acid polymerase-DNA dynamics
• Nonlinear DNA dynamics: Hierarchy of the models
• Nonlinear dynamics and statistical physics of DNA
• Nonlinear dynamics of damped DNA systems with long-range interactions
• Nonlinear molecular excitations in a completely inhomogeneous DNA chain
• Perturbed soliton excitations in the DNA double helix
• Semi-discrete breather in a helicoidal DNA double chain-model
• Solitary waves in an inhomogeneous chain of -helical proteins
• Soliton Evolution in the Presence of Perturbation

Cited in

(3)

• Forming localized waves of the nonlinearity of the DNA dynamics arising in oscillator-chain of Peyrard-Bishop model
• Solitons in the Peyrard–Bishop model of DNA and the Renormalization Group method
• Quasi-stationary evolution of cubic-quintic NLSE drop-like solitons in DNA-protein systems

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