Looping mechanics of rods and DNA with non-homogeneous and discontinuous stiffness

DOI10.1016/J.IJNONLINMEC.2008.06.013MaRDI QIDQ620332zbMATHOpenAlexFDO

Authors Sachin Goyal, Noel C. Perkins

Publication date 19 January 2011

Published in International Journal of Non-Linear Mechanics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.ijnonlinmec.2008.06.013

zbMATH Keywords

lac repressorKirchhoff rodDNA loopingkinkable DNAlooping mechanicsnon-homogeneous stiffnessrod dynamics

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Rods (beams, columns, shafts, arches, rings, etc.) (74K10)

Recommendations

• Modelling DNA loops using continuum and statistical mechanics One contribution of 16 to a Theme ‘The mechanics of DNA’
• Nonlinear dynamics and loop formation in Kirchhoff rods with implications to the mechanics of DNA and cables
• Mesoscale modeling of multi-protein-DNA assemblies: the role of the catabolic activator protein in lac-repressor-mediated looping
• An introduction to the mechanics of DNA
• Torsion of DNA modeled as a heterogeneous fluctuating rod

Cited in

(10)

• Allosteric interactions in a birod model of DNA
• Linearized Bayesian inference for Young's modulus parameter field in an elastic model of slender structures
• Modeling structures and motions of loops in protein molecules
• An elastic model of DNA under thermal induced stress
• Modelling the DNA topology: the effect of the loop bending on G-quadruplex stability
• Modeling RNA:DNA hybrids with formal grammars
• An introduction to the mechanics of DNA
• NON-HARMONIC DNA BENDING ELASTICITY IS REVEALED BY STATISTICS OF DNA MINICIRCLE SHAPES
• Robust estimation of nonlinear constitutive law from static equilibrium data for modeling the mechanics of DNA
• Theory of self–contact in Kirchhoff rods with applications to supercoiling of knotted and unknotted DNA plasmids

This page was built for publication: Looping mechanics of rods and DNA with non-homogeneous and discontinuous stiffness

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q620332)