A matrix perturbation method for computing the steady-state probability distributions of probabilistic Boolean networks with gene perturbations

DOI10.1016/J.CAM.2010.10.021MaRDI QIDQ629480zbMATH OpenOpenAlexFDO

Authors Wei-Wei Xu, Wai-Ki Ching, Shuqin Zhang, Wen Li, Xiao Shan Chen

Publication date 9 March 2011

Published in Journal of Computational and Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.cam.2010.10.021

zbMATH Keywords

Boolean networksprobabilistic Boolean networkssteady-state probability distributiongene perturbationperturbation matrix

Mathematics Subject Classification ID

Systems biology, networks (92C42) Combinatorial probability (60C05)

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Cites work

• scientific article; zbMATH DE number 47363 (Why is no real title available?)
• Control of Boolean networks: hardness results and algorithms for tree structured networks
• Markov chains: models, algorithms and applications
• New perturbation analysis for generalized saddle point systems

Cited in

(12)

• Dimension reduction of large sparse AND-NOT network models
• Steady-state probabilities for attractors in probabilistic Boolean networks
• On computation of the steady-state probability distribution of probabilistic Boolean networks with gene perturbation
• Steady-state analysis of probabilistic Boolean networks
• On the long-run sensitivity of probabilistic Boolean networks
• The effects of node exclusion on the centrality measures in graph models of interacting economic agents
• GPU-accelerated steady-state computation of large probabilistic Boolean networks
• Construction of probabilistic Boolean networks from a prescribed transition probability matrix: a maximum entropy rate approach.
• On generating optimal sparse probabilistic Boolean networks with maximum entropy from a positive stationary distribution.
• Function perturbation impact on stability in distribution of probabilistic Boolean networks
• Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks
• Fitting Boolean networks from steady state perturbation data

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