Natural family-free genomic distance

DOI10.4230/LIPICS.WABI.2020.3MaRDI QIDQ6487622zbMATH OpenFDO

Authors Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga

Publication date 7 February 2023

zbMATH Keywords

genome rearrangementcomparative genomicsDCJ-indel distance

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08) Biomechanics (92C10)

Recommendations

• Computing the rearrangement distance of natural genomes
• New genome similarity measures based on conserved gene adjacencies
• An overview of genomic distances modeled with indels
• Genome rearrangements on both gene order and intergenic regions
• The gene family-free median of three

Cites work

• scientific article; zbMATH DE number 1306890 (Why is no real title available?)
• A linear time approximation algorithm for the DCJ distance for genomes with bounded number of duplicates
• Computing the rearrangement distance of natural genomes
• On the Approximability of Comparing Genomes with Duplicates
• The complexity of calculating exemplar distances
• The potential of family-free genome comparison

Cited in

(6)

• The potential of family-free genome comparison
• New genome similarity measures based on conserved gene adjacencies
• An overview of genomic distances modeled with indels
• Computing the rearrangement distance of natural genomes
• Generalizations of the genomic rank distance to indels
• Bridging disparate views on the DCJ-indel model for a capping-free solution to the natural distance problem

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