New genome similarity measures based on conserved gene adjacencies

DOI10.1007/978-3-319-31957-5_15MaRDI QIDQ2814599zbMATH OpenOpenAlexFDO

Authors Luis Antonio B. Kowada, Daniel Doerr, Simone Dantas, Jens Stoye

Publication date 22 June 2016

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-319-31957-5_15

zbMATH Keywords

gene adjacenciesgene connectionsgene family-free

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15) Computational methods for problems pertaining to biology (92-08)

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Cites work

• A new linear time algorithm to compute the genomic distance via the double cut and join distance
• An $n^{5/2} $ Algorithm for Maximum Matchings in Bipartite Graphs
• The complexity of calculating exemplar distances
• Transforming cabbage into turnip

Cited in

(10)

• The potential of family-free genome comparison
• A local-global gene comparison for ortholog detection in two closely related eukaryotes species
• CCor: a whole genome network-based similarity measure between two genes
• Analysis of the Period Recovery Error Bound
• Self-similarity analysis of eubacteria genome based on weighted graph
• Quantifying hierarchical conflicts in homology statements
• Natural family-free genomic distance
• Comparing bacterial genomes from linear orders of patterns
• Measures for the exceptionality of gene order in conserved genomic regions
• On the similarity of sets of permutations and its applications to genome comparison

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