New genome similarity measures based on conserved gene adjacencies

DOI10.1007/978-3-319-31957-5_15zbMATH Open1355.92067OpenAlexW2386581568MaRDI QIDQ2814599FDOQ2814599

Authors: Luis Antonio B. Kowada, Daniel Doerr, Simone Dantas, Jens Stoye 

Publication date: 22 June 2016

Published in: Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-319-31957-5_15

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zbMATH Keywords

gene adjacenciesgene connectionsgene family-free

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15) Computational methods for problems pertaining to biology (92-08)

Cites Work

• An $n^{5/2} $ Algorithm for Maximum Matchings in Bipartite Graphs
• Transforming cabbage into turnip
• The complexity of calculating exemplar distances
• A new linear time algorithm to compute the genomic distance via the double cut and join distance

Cited In (10)

• A local-global gene comparison for ortholog detection in two closely related eukaryotes species
• CCor: a whole genome network-based similarity measure between two genes
• Analysis of the Period Recovery Error Bound
• Self-similarity analysis of eubacteria genome based on weighted graph
• Quantifying hierarchical conflicts in homology statements
• Natural family-free genomic distance
• Comparing bacterial genomes from linear orders of patterns
• Measures for the exceptionality of gene order in conserved genomic regions
• On the similarity of sets of permutations and its applications to genome comparison
• The potential of family-free genome comparison

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