Bubble coalescence in interacting system of DNA molecules

DOI10.1142/S1793524523500389MaRDI QIDQ6542974zbMATH OpenFDO

Authors U. A. Rozikov

Publication date 23 May 2024

Published in International Journal of Biomathematics (Search for Journal in Brave)

zbMATH Keywords

bubbleDNAPotts modelGibbs measureCayley treeconfiguration

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Lattice systems (Ising, dimer, Potts, etc.) and systems on graphs arising in equilibrium statistical mechanics (82B20)

Recommendations

• Thermodynamics of interacting systems of DNA molecules
• Bubble dynamics in DNA
• Bubbles, clusters and denaturation in genomic DNA: modeling, parametrization, efficient computation
• Thermodynamics of DNA–RNA renaturation
• Loop exponent in DNA bubble dynamics

Cites work

• scientific article; zbMATH DE number 3386710 (Why is no real title available?)
• Description of periodic \(p\)-harmonic functions on Cayley tree
• Description of the translation-invariant splitting Gibbs measures for the Potts model on a Cayley tree
• Extremality of translation-invariant phases for a three-state SOS-model on the binary tree
• Free energies of the Potts model on a Cayley tree
• Fuzzy transformations and extremality of Gibbs measures for the Potts model on a Cayley tree
• Gibbs Measures in Biology and Physics
• Gibbs measures and phase transitions.
• Gibbs measures on Cayley trees
• Holliday junctions for the Potts model of DNA
• On the uniqueness of Gibbs measure in the Potts model on a Cayley tree with external field
• Thermodynamics of interacting systems of DNA molecules
• Tree-hierarchy of DNA and distribution of Holliday junctions

Cited in

(1)

• Thermodynamics of DNA–RNA renaturation

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