Conservative, unconditionally stable discretization methods for Hamiltonian equations, applied to wave motion in lattice equations modeling protein molecules

DOI10.1016/J.PHYSD.2011.09.012MaRDI QIDQ655557zbMATH OpenOpenAlexFDO

Authors Brenton J. LeMesurier

Publication date 4 January 2012

Published in Physica D (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.physd.2011.09.012

zbMATH Keywords

Hamiltonian systemsunconditional stabilitylattice wave equationsconservative time discretizationsprotein energeticsmolecular chains

Mathematics Subject Classification ID

General mathematical topics and methods in quantum theory (81Q99) Biophysics (92C05)

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Cites work

• scientific article; zbMATH DE number 3967860 (Why is no real title available?)
• scientific article; zbMATH DE number 702482 (Why is no real title available?)
• Derivation of the discrete conservation laws for a family of finite difference schemes
• Exact energy and momentum conserving algorithms for general models in nonlinear elasticity
• Exact energy-momentum conserving algorithms and symplectic schemes for nonlinear dynamics
• Finite Difference Calculus Invariant Structure of a Class of Algorithms for the Nonlinear Klein–Gordon Equation
• Geometric Numerical Integration
• Geometric integration using discrete gradients
• Lectures on Mechanics
• Lie-Poisson Hamilton-Jacobi theory and Lie-Poisson integrators
• On the stability of symplectic and energy-momentum algorithms for nonlinear Hamiltonian systems with symmetry
• Solitons in Molecular Systems
• Symplectic integration of Hamiltonian systems
• The Vibrational Structure of Davydov Solitons
• Time integration and discrete Hamiltonian systems

Cited in

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• Studying Davydov's ODE model of wave motion in \(\alpha \)-helix protein using exactly energy-momentum conserving discretizations for Hamiltonian systems

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