Unconditionally energy-stable SAV-FEM for the dynamics model of protein folding

DOI10.1007/S10915-024-02687-YMaRDI QIDQ6629220zbMATH OpenFDO

Authors Dan Zhang, Bo Wang, Guang-an Zou, Yuxing Zhang

Publication date 29 October 2024

Published in Journal of Scientific Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/S10915-024-02687-Y

zbMATH Keywords

coupled nonlinear Schrödinger equationsCrank-Nicolson methodfinite element methodoptimal error estimateprotein folding dynamicsscalar auxiliary variable

Mathematics Subject Classification ID

Stability and convergence of numerical methods for initial value and initial-boundary value problems involving PDEs (65M12) Error bounds for initial value and initial-boundary value problems involving PDEs (65M15) Finite element, Rayleigh-Ritz and Galerkin methods for initial value and initial-boundary value problems involving PDEs (65M60)

Cites work

• A conservative linearized difference scheme for the nonlinear fractional Schrödinger equation
• A fully-decoupled discontinuous Galerkin approximation of the Cahn–Hilliard–Brinkman–Ohta–Kawasaki tumor growth model
• A fully-decoupled discontinuous Galerkin method for the nematic liquid crystal flows with SAV approach
• A linearly implicit conservative scheme for the fractional nonlinear Schrödinger equation with wave operator
• A new class of efficient and robust energy stable schemes for gradient flows
• A new error analysis of Crank-Nicolson Galerkin FEMs for a generalized nonlinear Schrödinger equation
• A relaxation-type Galerkin FEM for nonlinear fractional Schrödinger equations
• A space-time finite element method for the nonlinear Schrödinger equation: the discontinuous Galerkin method
• A stabilized divergence-free virtual element scheme for the nematic liquid crystal flows
• An exact solution for the modified nonlinear Schrödinger's equation for Davydov solitons in -helix proteins
• Conforming and nonconforming conservative virtual element methods for nonlinear Schrödinger equation: a unified framework
• Controller design to stabilization of Schrödinger equation with boundary input disturbance
• Crank-Nicolson Galerkin approximations to nonlinear Schrödinger equations with rough potentials
• Efficient interior penalty discontinuous Galerkin projection method with unconditional energy stability and second-order temporal accuracy for the incompressible magneto-hydrodynamic system
• Fully discrete discontinuous Galerkin numerical scheme with second-order temporal accuracy for the hydrodynamically coupled lipid vesicle model
• Galerkin finite element method for nonlinear fractional Schrödinger equations
• Nonlinear dynamics of secondary protein folding
• Numerical methods and comparison for computing dark and bright solitons in the nonlinear Schrödinger equation
• On fully discrete Galerkin methods of second-order temporal accuracy for the nonlinear Schrödinger equation
• Second-order SAV schemes for the nonlinear Schrödinger equation and their error analysis
• The scalar auxiliary variable (SAV) approach for gradient flows
• Theoretical astrophysics, Vol. 2. Stars and stellar systems
• Unconditional energy dissipation and error estimates of the SAV Fourier spectral method for nonlinear fractional generalized wave equation
• Unconditional superconvergence analysis of a Crank-Nicolson Galerkin FEM for nonlinear Schrödinger equation
• Unconditionally energy-stable finite element scheme for the chemotaxis-fluid system

Cited in

(1)

• Unconditionally energy-stable discontinuous Galerkin method for the dynamics model of protein folding

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