Nonlinear dynamics of secondary protein folding

DOI10.1016/J.PHYSLETA.2005.01.080MaRDI QIDQ2478784zbMATH OpenOpenAlexFDO

Authors Natalia G. Berloff

Publication date 25 March 2008

Published in Physics Letters. A (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.physleta.2005.01.080

zbMATH Keywords

folding pathwaynonlinear excitationnonlinear Schrödinger equationprotein foldingsoliton

Mathematics Subject Classification ID

NLS equations (nonlinear Schrödinger equations) (35Q55) Protein sequences, DNA sequences (92D20)

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Cites work

• Interaction of electrons with lattice vibrations

Cited in

(15)

• Sonication-induced unfolding proteins
• Traveling waves in elastic rods with arbitrary curvature and torsion
• New exact solutions of the \((4+1)\)-dimensional Fokas equation via extended version of \(\exp (-\psi (\kappa))\)-expansion method
• Gauge fields, strings, solitons, anomalies, and the speed of life
• Solitary wave solutions for \((1+2)\)-dimensional nonlinear Schrödinger equation with dual power law nonlinearity
• A solvable model of secondary structure formation in random hetero-polymers
• Brownian Dynamics Approach to Protein Folding
• A solvable model of the genesis of amino-acid sequences via coupled dynamics of folding and slow-genetic variation
• FRACTAL ASPECTS OF PROTEIN STRUCTURE AND DYNAMICS
• Molecular nonlinear dynamics and protein thermal uncertainty quantification
• Folding of polymer chains with short-range binormal interactions
• Probabilistic structural dynamics of protein folding
• Dissipative dynamics and the statistics of energy states of a Hookean model for protein folding
• Unconditionally energy-stable SAV-FEM for the dynamics model of protein folding
• Unconditionally energy-stable discontinuous Galerkin method for the dynamics model of protein folding

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