Statistics for microsatellite variation based on coalescence

DOI10.1006/TPBI.1996.0034MaRDI QIDQ678568zbMATHOpenAlexWikidataFDO

Authors Jonathan K. Pritchard, Marcus W. Feldman

Publication date 3 August 1997

Published in Theoretical Population Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

Full work available at URL https://semanticscholar.org/paper/8d5690b7cd3b1e18547ce9ce963626099e4b7042

zbMATH Keywords

microsatellitesmean square coalescence timesstepwise mutation model

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15)

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• A Markov chain description of the stepwise mutation model: local and global behaviour of the allele process
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• A model of dynamics of mutation, genetic drift and recombination in DNA-repeat genetic loci
• The SMM model as a boundary value problem using the discrete diffusion equation
• Genetic diversity of microsatellite loci in hierarchically structured populations
• The distribution of coalescence times and distances between microsatellite alleles with changing effective population size
• scientific article; zbMATH DE number 2076036 (Why is no real title available?)
• Fifty years of theoretical population biology
• High mutation rate loci in a subdivided population
• Matrix inversions for chromosomal inversions: a method to construct summary statistics in complex coalescent models
• Homogeneity tests among groups for microsatellite data
• Inference on microsatellite mutation processes in the invasive mite, varroa destructor, using reversible jump Markov chain Monte Carlo
• Variances and covariances of squared linkage disequilibria in finite populations
• Population Structure and Covariate Analysis Based on Pairwise Microsatellite Allele Matching Frequencies
• Application of a time-dependent coalescence process for inferring the history of population size changes from DNA sequence data
• On the size distribution of private microsatellite alleles

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