The HP model of protein folding: a challenging testing ground for Wang-Landau sampling

DOI10.1016/j.cpc.2008.01.028zbMath1197.82031OpenAlexW2066028596MaRDI QIDQ711191

D. P. Landau, Thomas Wüst

Publication date: 25 October 2010

Published in: Computer Physics Communications (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.cpc.2008.01.028

zbMATH Keywords

protein foldingWang-Landau samplingHP modelmove sets

Mathematics Subject Classification ID

Related Items (5)

Monte Carlo simulations of systems with complex energy landscapes ⋮ Efficient algorithm for computing exact partition functions of lattice polymer models ⋮ Application of Wang-Landau sampling to a protein model using SMMP ⋮ Universality aspects of the 2d random-bond Ising and 3D Blume-Capel models ⋮ Unraveling the beautiful complexity of simple lattice model polymers and proteins using Wang-Landau sampling

Cites Work

• Determining the density of states for classical statistical models by a flat-histogram random walk
• The pivot algorithm: a highly efficient Monte Carlo method for the self-avoiding walk.
• Three-dimensional antiferromagneticq-state Potts models: application of the Wang-Landau algorithm

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