The HP model of protein folding: a challenging testing ground for Wang-Landau sampling

DOI10.1016/J.CPC.2008.01.028MaRDI QIDQ711191zbMATH OpenOpenAlexFDO

Authors David P. Landau, Thomas Wüst

Publication date 25 October 2010

Published in Computer Physics Communications (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.cpc.2008.01.028

zbMATH Keywords

protein foldingWang-Landau samplingHP modelmove sets

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

Recommendations

• Unraveling the beautiful complexity of simple lattice model polymers and proteins using Wang-Landau sampling
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Cites work

• Determining the density of states for classical statistical models by a flat-histogram random walk
• The pivot algorithm: a highly efficient Monte Carlo method for the self-avoiding walk.
• Three-dimensional antiferromagneticq-state Potts models: application of the Wang-Landau algorithm

Cited in

(8)

• Monte Carlo simulations of systems with complex energy landscapes
• Universality aspects of the 2d random-bond Ising and 3D Blume-Capel models
• scientific article; zbMATH DE number 5504052 (Why is no real title available?)
• Application of Wang-Landau sampling to a protein model using SMMP
• Efficient algorithm for computing exact partition functions of lattice polymer models
• Unraveling the beautiful complexity of simple lattice model polymers and proteins using Wang-Landau sampling
• A filter-and-fan approach to the 2D HP model of the protein folding problem
• Protein folding in the HP model on grid lattices with diagonals

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