What is required for neuronal calcium waves? A numerical parameter study

DOI10.1186/s13408-018-0064-xzbMath1395.92034OpenAlexW2884288897WikidataQ90152014 ScholiaQ90152014MaRDI QIDQ723705

Markus Breit, Gillian Queisser

Publication date: 24 July 2018

Published in: The Journal of Mathematical Neuroscience (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1186/s13408-018-0064-x

zbMATH Keywords

numerical simulation3D modelingcalcium wavesendoplasmic reticulumryanodine receptorsstructure-function interplay

Mathematics Subject Classification ID

Reaction-diffusion equations (35K57) Neural biology (92C20) Cell biology (92C37)

Related Items (3)

Neuronal Resilience and Calcium Signaling Pathways in the Context of Synapse Loss and Calcium Leaks: A Computational Modeling Study and Implications for Alzheimer’s Disease ⋮ Special issue from the 2017 international conference on mathematical neuroscience ⋮ The Necessary Modeling Detail for Neuronal Signaling: Poisson--Nernst--Planck and Cable Equation Models in One and Three Dimensions

Uses Software

• SuperLU
• UG4
• libGrid
• libAlgebra
• libDiscretization
• pcl
• VRL

Cites Work

• Calcium waves with fast buffers and mechanical effects
• Order and stepsize control in extrapolation methods
• A bidomain threshold model of propagating calcium waves
• One-step and extrapolation methods for differential-algebraic systems
• Wave bifurcation and propagation failure in a model of Ca\(^{2+}\) release
• \textit{UG} 4: a novel flexible software system for simulating PDE based models on high performance computers
• Computational modelling of nonlinear calcium waves
• Bi-CGSTAB: A Fast and Smoothly Converging Variant of Bi-CG for the Solution of Nonsymmetric Linear Systems
• A Supernodal Approach to Sparse Partial Pivoting

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