Analysis of single particle diffusion with transient binding using particle filtering

DOI10.1016/J.JTBI.2016.04.013MaRDI QIDQ738666zbMATH OpenOpenAlexWikidataFDO

Authors Jason Bernstein, John Fricks

Publication date 5 September 2016

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2016.04.013

zbMATH Keywords

particle filterswitching modelparticle tracking

Mathematics Subject Classification ID

Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Biochemistry, molecular biology (92C40) Biophysics (92C05)

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Cites work

• scientific article; zbMATH DE number 1666084 (Why is no real title available?)
• scientific article; zbMATH DE number 3567782 (Why is no real title available?)
• AN APPROACH TO TIME SERIES SMOOTHING AND FORECASTING USING THE EM ALGORITHM
• Analysis of time series subject to changes in regime
• Bayesian filtering and smoothing
• Dynamic linear models with Markov-switching
• Efficient estimation of Markov regime-switching models: an application to electricity spot prices
• Finite mixture and Markov switching models.
• Fitting Stochastic Volatility Models in the Presence of Irregular Sampling via Particle Methods and the EM Algorithm
• Hidden Markov Models for Time Series
• Inference in hidden Markov models.
• Markov chain Monte Carlo methods for switching diffusion models
• On the convergence properties of the EM algorithm
• Particle approximations of the score and observed information matrix in state space models with application to parameter estimation
• Time series analysis by state space methods.

Cited in

(8)

• A \texttt{Matlab} program to calculate translational and rotational diffusion coefficients of a single particle
• Transport facilitated by rapid binding to elastic tethers
• Antibody-mediated immobilization of virions in mucus
• Adaptive meshfree backward SDE filter
• Statistical methodology in single-molecule experiments
• Stochastic analysis of single particle segregational dynamics
• A random walk model to evaluate autism
• First-passage times of multiple diffusing particles with reversible target-binding kinetics

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Uses Software

• astsa

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