Identifying the interacting positions of a protein using Boolean learning and support vector machines

DOI10.1016/J.COMPBIOLCHEM.2006.04.001MaRDI QIDQ849527zbMATH OpenOpenAlexWikidataFDO

Authors Anshul Dubey, Matthew J. Realff, Andreas S. Bommarius, Jay H. Lee

Publication date 31 October 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2006.04.001

zbMATH Keywords

Boolean functiondirected evolutioninteracting positionOCATrecombinationssupport vector machines

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Biophysics (92C05) Biochemistry, molecular biology (92C40)

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Cites work

• A decision-theoretic generalization of on-line learning and an application to boosting
• A greedy randomized adaptive search procedure (GRASP) for inferring logical clauses from examples in polynomial time and some extensions
• An approach to guided learning of Boolean functions
• An incremental learning algorithm for constructing Boolean functions from positive and negative examples
• Better Bootstrap Confidence Intervals
• Boosting the margin: a new explanation for the effectiveness of voting methods
• scientific article; zbMATH DE number 4125344 (Why is no real title available?)
• scientific article; zbMATH DE number 708500 (Why is no real title available?)
• scientific article; zbMATH DE number 823069 (Why is no real title available?)
• Inference of a minimum size Boolean function from examples by using a new efficient branch-and-bound approach
• Support vector machines for learning to identify the critical positions of a protein

Cited in

(3)

• SDPhound, a mutual information-based method to investigate specificity-determining positions
• Directed molecular evolution by machine learning and the influence of nonlinear interactions
• Support vector machines for learning to identify the critical positions of a protein

Describes a project that uses

Uses Software

• bootstrap
• AdaBoost.MH

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