Developing Itô stochastic differential equation models for neuronal signal transduction path\-ways

DOI10.1016/J.COMPBIOLCHEM.2006.04.002MaRDI QIDQ849530zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Tiina Manninen, Marja-Leena Linne, Keijo Ruohonen

Publication date 31 October 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2006.04.002

zbMATH Keywords

chemical Langevin equationGillespie stochastic simulation algorithmneuronal signal transductionItô stochastic differential equation

Mathematics Subject Classification ID

Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Neural biology (92C20) Biomedical imaging and signal processing (92C55) Stochastic ordinary differential equations (aspects of stochastic analysis) (60H10) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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Cites work

• An algorithmic introduction to numerical simulation of stochastic differential equations
• Balanced Implicit Methods for Stiff Stochastic Systems
• Computational Methods in Systems Biology
• Numerical methods for strong solutions of stochastic differential equations: an overview
• Stochastic approaches for modelling in vivo reactions
• Stochastic differential equations. An introduction with applications.
• The multivariate Langevin and Fokker–Planck equations
• The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior

Cited in

(11)

• On constrained Langevin equations and (bio)chemical reaction networks
• Comparison of Markov chain and stochastic differential equation population models under higher-order moment closure approximations
• Hybrid stochastic simulations of intracellular reaction-diffusion systems
• A numerical method for solving stochastic Volterra-Fredholm integral equation
• Stochastic representations of ion channel kinetics and exact stochastic simulation of neuronal dynamics
• Construction of Equivalent Stochastic Differential Equation Models
• Physically consistent simulation of mesoscale chemical kinetics: the non-negative FIS-\(\alpha\) method
• Deterministic and stochastic models of Arabidopsis thaliana flowering
• DESIGN OF DETERMINISTIC MODEL OF SIGNAL TRANSDUCTION BETWEEN NEURONAL CELLS
• Comparison of deterministic and stochastic regime in a model for Cdc42 oscillations in fission yeast
• Stochastic differential equation models for extracellular signal-regulated kinase pathways

Describes a project that uses

Uses Software

• STOCHSIM

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