A second-order, unconditionally positive, mass-conserving integration scheme for biochemical systems
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Publication:857024
The authors consider the numerical simulation of biochemical systems which satisfy conservation and positivity laws. Even though standard numerical schemes do not maintain conservation and positivity, two new low order methods are introduced which do obey these restrictions.
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Cites work
- A high-order conservative Patankar-type discretisation for stiff systems of production--destruction equations
- An unconditionally convergent discretizaton of the SEIR model
- An unconditionally convergent finite-difference scheme for the \(SIR\) model
- Analysis of a finite-difference scheme for a linear advection-diffusion-reaction equation
- Bi-trophic food chain dynamics with multiple component populations
- Conservation de la positivité lors de la discrétisation des problèmes d'évolution paraboliques
- scientific article; zbMATH DE number 3958938 (Why is no real title available?)
- scientific article; zbMATH DE number 4045043 (Why is no real title available?)
- scientific article; zbMATH DE number 1967777 (Why is no real title available?)
- Positive numerical integration methods for chemical kinetic systems
- Solving Ordinary Differential Equations I
- Stoichiometry and food-chain dynamics
- What the egg can tell about its hen: Embryonic development on the basis of dynamic energy budgets
Cited in
(22)- On order conditions for modified Patankar-Runge-Kutta schemes
- Unconditionally positive and conservative third order modified Patankar-Runge-Kutta discretizations of production-destruction systems
- Positive and conservative schemes for mass action kinetics
- \textit{GeCo}: geometric conservative nonstandard schemes for biochemical systems
- Issues with positivity-preserving Patankar-type schemes
- Second-order unconditional positive preserving schemes for non-equilibrium reactive flows with mass and mole balance
- A comprehensive theory on generalized BBKS schemes
- Extension of modified Patankar-Runge-Kutta schemes to nonautonomous production-destruction systems based on Oliver's approach
- An improved and generalized second order, unconditionally positive, mass conserving integration scheme for biochemical systems
- Lyapunov functions and global stability for a discretized multigroup SIR epidemic model
- A second-order asymptotic-preserving and positivity-preserving discontinuous Galerkin scheme for the Kerr–Debye model
- Positivity and conservation properties of some integration schemes for mass action kinetics
- A conservative, positivity preserving scheme for advection-diffusion-reaction equations in biochemical applications
- A second-order positivity preserving scheme for semilinear parabolic problems
- Positivity-preserving methods for ordinary differential equations
- On the Stability of Unconditionally Positive and Linear Invariants Preserving Time Integration Schemes
- On the stability of strong-stability-preserving modified Patankar–Runge–Kutta schemes
- On the dynamics of first and second order GeCo and gBBKS schemes
- Framework for solving dynamics of Ca2+ ion concentrations in liver cells numerically: Analysis of a non‐negativity‐preserving non‐standard finite‐difference method
- Combination of nonstandard schemes and Richardson's extrapolation to improve the numerical solution of population models
- Order conditions for Runge-Kutta-like methods with solution-dependent coefficients
- An unconditionally positive and global stability preserving NSFD scheme for an epidemic model with vaccination
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