A second-order, unconditionally positive, mass-conserving integration scheme for biochemical systems

DOI10.1016/j.apnum.2005.12.001zbMath1123.65067OpenAlexW2572911505MaRDI QIDQ857024

Jorn Bruggeman, Hans Burchard, B. P. Sommeijer, Bob W. Kooi

Publication date: 14 December 2006

Published in: Applied Numerical Mathematics (Search for Journal in Brave)

Full work available at URL: https://ir.cwi.nl/pub/11715

zbMATH Keywords

mass conservationRunge-Kutta methodsbiochemical systemsunconditional positivityPatankar-type schemes

Mathematics Subject Classification ID

Nonlinear ordinary differential equations and systems (34A34) Biochemistry, molecular biology (92C40) Numerical methods for initial value problems involving ordinary differential equations (65L05) Multistep, Runge-Kutta and extrapolation methods for ordinary differential equations (65L06)

Related Items (18)

Second-order unconditional positive preserving schemes for non-equilibrium reactive flows with mass and mole balance ⋮ Positivity-preserving methods for ordinary differential equations ⋮ On the Stability of Unconditionally Positive and Linear Invariants Preserving Time Integration Schemes ⋮ On order conditions for modified Patankar-Runge-Kutta schemes ⋮ On the stability of strong-stability-preserving modified Patankar–Runge–Kutta schemes ⋮ On the dynamics of first and second order GeCo and gBBKS schemes ⋮ Combination of nonstandard schemes and Richardson's extrapolation to improve the numerical solution of population models ⋮ A comprehensive theory on generalized BBKS schemes ⋮ Framework for solving dynamics of Ca²⁺ ion concentrations in liver cells numerically: Analysis of a non‐negativity‐preserving non‐standard finite‐difference method ⋮ A second-order positivity preserving scheme for semilinear parabolic problems ⋮ A second-order asymptotic-preserving and positivity-preserving discontinuous Galerkin scheme for the Kerr–Debye model ⋮ Extension of modified Patankar-Runge-Kutta schemes to nonautonomous production-destruction systems based on Oliver's approach ⋮ \textit{GeCo}: geometric conservative nonstandard schemes for biochemical systems ⋮ An improved and generalized second order, unconditionally positive, mass conserving integration scheme for biochemical systems ⋮ Unconditionally positive and conservative third order modified Patankar-Runge-Kutta discretizations of production-destruction systems ⋮ An unconditionally positive and global stability preserving NSFD scheme for an epidemic model with vaccination ⋮ Issues with positivity-preserving Patankar-type schemes ⋮ Lyapunov functions and global stability for a discretized multigroup SIR epidemic model

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