Integer linear programming approaches for non-unique probe selection

DOI10.1016/J.DAM.2005.09.021MaRDI QIDQ876483zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert

Publication date 18 April 2007

Published in Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.dam.2005.09.021

zbMATH Keywords

designmicroarrayinteger linear programminggroup testingoligonucleotideprobe

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Integer programming (90C10)

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Cites work

• scientific article; zbMATH DE number 1312984 (Why is no real title available?)
• scientific article; zbMATH DE number 1945182 (Why is no real title available?)
• Integer linear programming approaches for non-unique probe selection

Cited in

(13)

• Non-unique probe selection and group testing
• Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays
• On the complexity and approximation of non-unique probe selection using \(d\)-disjunct matrix
• A Fast Preprocessing Algorithm to Select Gene-Specific Probes of DNA Microarrays
• Randomized probe selection algorithm for microarray design
• Integer linear programming approaches for non-unique probe selection
• scientific article; zbMATH DE number 1945182 (Why is no real title available?)
• Mathematical programming in computational biology: an annotated bibliography
• Asynchronous teams for probe selection problems
• Integer Linear Programming in Computational Biology
• Searching oligo sets of human chromosome 12 using evolutionary strategies
• On the complexity of non-unique probe selection
• Combinatorial Pattern Matching

Describes a project that uses

Uses Software

• CPLEX
• OligoPicker

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