Bayesian Monte Carlo estimation for profile hidden Markov models

DOI10.1016/J.MCM.2007.07.002zbMATH Open1145.62313OpenAlexW2087572004MaRDI QIDQ949487FDOQ949487

Authors: Steven J. Lewis, Alpan Raval, John E. Angus 

Publication date: 21 October 2008

Published in: Mathematical and Computer Modelling (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.mcm.2007.07.002

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zbMATH Keywords

Bayesian methodsestimationMarkov chain Monte Carlo methodshidden Markov models

Mathematics Subject Classification ID

Point estimation (62F10) Bayesian inference (62F15) Markov processes: estimation; hidden Markov models (62M05) Monte Carlo methods (65C05)

Cites Work

• Stochastic models for heterogeneous DNA sequences
• Biological Sequence Analysis
• Error bounds for convolutional codes and an asymptotically optimum decoding algorithm
• A Maximization Technique Occurring in the Statistical Analysis of Probabilistic Functions of Markov Chains
• Statistical Inference for Probabilistic Functions of Finite State Markov Chains
• Bayesian Methods for Hidden Markov Models
• Probabilistic Functions of Finite State Markov Chains

Cited In (8)

• Pattern recognition methods for advanced stochastic protein sequence analysis using HMMs
• Title not available (Why is that?)
• Hierarchical Bayesian Approach to a Multi-Site Hidden Markov Model
• Recursive least squares parameter estimation for non-uniformly sampled systems based on the data filtering
• Bayesian estimation of hidden Markov chains: A stochastic implementation
• Uniform accuracy of the maximum likelihood estimates for probabilistic models of biological sequences
• Fuzzy measures and integrals in profile hidden Markov models for protein sequence analysis
• Multiple alignment analysis based on hidden Markov models

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