Bayesian Monte Carlo estimation for profile hidden Markov models

DOI10.1016/J.MCM.2007.07.002zbMATH Open1145.62313OpenAlexW2087572004MaRDI QIDQ949487FDOQ949487

Authors Steven J. Lewis, Alpan Raval, John E. Angus

Publication date 21 October 2008

Published in Mathematical and Computer Modelling (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mcm.2007.07.002

zbMATH Keywords

Bayesian methodsestimationMarkov chain Monte Carlo methodshidden Markov models

Mathematics Subject Classification ID

Point estimation (62F10) Bayesian inference (62F15) Markov processes: estimation; hidden Markov models (62M05) Monte Carlo methods (65C05)

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Cites work

• A Maximization Technique Occurring in the Statistical Analysis of Probabilistic Functions of Markov Chains
• Bayesian Methods for Hidden Markov Models
• Biological Sequence Analysis
• Error bounds for convolutional codes and an asymptotically optimum decoding algorithm
• Probabilistic Functions of Finite State Markov Chains
• Statistical Inference for Probabilistic Functions of Finite State Markov Chains
• Stochastic models for heterogeneous DNA sequences

Cited in

(8)

• Recursive least squares parameter estimation for non-uniformly sampled systems based on the data filtering
• scientific article; zbMATH DE number 2034454 (Why is no real title available?)
• Uniform accuracy of the maximum likelihood estimates for probabilistic models of biological sequences
• Fuzzy measures and integrals in profile hidden Markov models for protein sequence analysis
• Pattern recognition methods for advanced stochastic protein sequence analysis using HMMs
• Bayesian estimation of hidden Markov chains: A stochastic implementation
• Multiple alignment analysis based on hidden Markov models
• Hierarchical Bayesian Approach to a Multi-Site Hidden Markov Model

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