Multiple alignment analysis based on hidden Markov models

MaRDI QIDQ5486820zbMATHFDO

Authors Zeju Luo, Miao He, Siming Zhu

Publication date 15 September 2006

zbMATH Keywords

multiple sequence alignmentprotein classification

Mathematics Subject Classification ID

Numerical analysis or methods applied to Markov chains (65C40) Biochemistry, molecular biology (92C40)

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• Inference with constrained hidden Markov models in PRISM
• Pattern recognition methods for advanced stochastic protein sequence analysis using HMMs
• Brief introduction to self-adapting hidden Markov model program for multiple sequences alignment
• Scoring hidden Markov models to discriminate \(\beta\)-barrel membrane proteins
• Statistical mechanics of transcription-factor binding site discovery using hidden Markov models

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