Statistical mechanics of transcription-factor binding site discovery using hidden Markov models

DOI10.1007/s10955-010-0102-xzbMath1221.82051arXiv1008.3151OpenAlexW2107665411WikidataQ42142343 ScholiaQ42142343MaRDI QIDQ540552

Pankaj Mehta, Anirvan M. Sengupta, David J. Schwab

Publication date: 3 June 2011

Published in: Journal of Statistical Physics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1008.3151

zbMATH Keywords

Fisher informationbioinformaticshidden Markov modelsmashine learningone-dimensional statistical mechanics

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Protein sequences, DNA sequences (92D20) Memory and learning in psychology (91E40) Stochastic methods applied to problems in equilibrium statistical mechanics (82B31)

Uses Software

• PRMLT

Cites Work

• A Maximization Technique Occurring in the Statistical Analysis of Probabilistic Functions of Markov Chains
• An invariant form for the prior probability in estimation problems
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