Application of biased Metropolis algorithms: from protons to proteins

DOI10.1016/J.MATCOM.2009.05.005MaRDI QIDQ974237zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Alexei Bazavov, B. Berg, Huan-Xiang Zhou

Publication date 27 May 2010

Published in Mathematics and Computers in Simulation (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc4657756

zbMATH Keywords

biophysicshigher energy physicsMarkov chain Monte Carlo

Mathematics Subject Classification ID

Monte Carlo methods (65C05)

Recommendations

• Some practical considerations in the use of Metropolis and force-biased Monte Carlo simulations on liquids
• Multipoint Metropolis method with application to hybrid Monte Carlo
• Sampling from rough energy landscapes
• Biomolecular sampling: algorithms, test molecules, and metrics
• scientific article; zbMATH DE number 3909610

Cites work

• [SMMP] A modern package for simulation of proteins
• Equation of state calculations by fast computing machines
• scientific article; zbMATH DE number 2121582 (Why is no real title available?)
• Monte Carlo sampling methods using Markov chains and their applications

Cited in

(5)

• The convergence properties and stochastic characteristics inherent in force-biased and in Metropolis Monte Carlo simulations on liquids
• Some practical considerations in the use of Metropolis and force-biased Monte Carlo simulations on liquids
• Sampling from rough energy landscapes
• Dynamical Spatial Warping: A Novel Method for the Conformational Sampling of Biophysical Structure
• Computational Science - ICCS 2004

Describes a project that uses

Uses Software

• SMMP

This page was built for publication: Application of biased Metropolis algorithms: from protons to proteins

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q974237)