SMMP

MaRDI QIDQ13626swMATHFDO

Official website http://www.cpc.cs.qub.ac.uk/summaries/ADOJ_v1_0.html

Described by source

• SMMP v. 3.0-simulating proteins and protein interactions in Python and Fortran

Cited in

(16)

• ARVO: A Fortran package for computing the solvent accessible surface area and the excluded volume of overlapping spheres via analytic equations
• New algorithms and the physics of proteins
• CAVE: A package for detection and quantitative analysis of internal cavities in a system of overlapping balls: Application to proteins
• An enhanced version of SMMP-open-source software package for simulation of proteins
• Application of Wang-Landau sampling to a protein model using SMMP
• Application of biased Metropolis algorithms: from protons to proteins
• ARVO
• CAVE
• SURFNET
• VADAR
• NSOL
• A unified \(O(\log N)\) and optimal sorting vector algorithm
• Molecular Dynamics Approach to Relaxation and Aggregation of Polymer Chains
• Generalized ensemble techniques and protein folding simulations
• A COMBINATION OF REPLICA EXCHANGE MONTE CARLO AND ENERGY LANDSCAPE PAVING ALGORITHMS TO INCREASE THE EFFECTIVENESS OF CONFORMATIONAL SAMPLING
• [SMMP] A modern package for simulation of proteins

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