CAVE: A package for detection and quantitative analysis of internal cavities in a system of overlapping balls: Application to proteins
DOI10.1016/J.CPC.2010.08.032zbMATH Open1216.92034OpenAlexW2162785950WikidataQ58429547 ScholiaQ58429547MaRDI QIDQ546795FDOQ546795
Authors: Ján Buša, Shura Hayryan, Chin-Kun Hu, Jaroslav Skřivánek, Ming-Chya Wu 
Publication date: 30 June 2011
Published in: Computer Physics Communications (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.cpc.2010.08.032
Recommendations
- CAVE-CL: an OpenCL version of the package for detection and quantitative analysis of internal cavities in a system of overlapping balls: application to proteins
- Detecting cavities in a system of overlapping spheres using enveloping triangulation
- ARVO: A Fortran package for computing the solvent accessible surface area and the excluded volume of overlapping spheres via analytic equations
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- On the definition and the construction of pockets in macromolecules
Biochemistry, molecular biology (92C40) Software, source code, etc. for problems pertaining to biology (92-04) Biophysics (92C05)
Cites Work
- ARVO: A Fortran package for computing the solvent accessible surface area and the excluded volume of overlapping spheres via analytic equations
- [SMMP] A modern package for simulation of proteins
- Triangulating the surface of a molecule
- An enhanced version of SMMP-open-source software package for simulation of proteins
Cited In (2)
Uses Software
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