CAVE: A package for detection and quantitative analysis of internal cavities in a system of overlapping balls: Application to proteins

DOI10.1016/j.cpc.2010.08.032zbMath1216.92034OpenAlexW2162785950WikidataQ58429547 ScholiaQ58429547MaRDI QIDQ546795

Ján Buša, Chin-Kun Hu, Ming-Chya Wu, Shura Hayryan, Jaroslav Skřivánek

Publication date: 30 June 2011

Published in: Computer Physics Communications (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.cpc.2010.08.032

zbMATH Keywords

triangulationFortran packageexcluded volumeARVOSMMP

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Biophysics (92C05) Software, source code, etc. for problems pertaining to biology (92-04)

Uses Software

• ARVO
• SMMP
• CAVE
• VADAR
• SURFNET

Cites Work

• ARVO: A Fortran package for computing the solvent accessible surface area and the excluded volume of overlapping spheres via analytic equations
• An enhanced version of SMMP-open-source software package for simulation of proteins
• [SMMP A modern package for simulation of proteins]
• Triangulating the surface of a molecule

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