r2sbml

MaRDI QIDQ7414834CRANFDO

Authors Satyaprakash Nayak

Last update 10 November 2026

Copyright license GNU General Public License, version 2.0, GNU General Public License, version 3.0

Software version identifier 0.1.0, PACKAGES.rds, 0.1.1

Description

Reads models in the Systems Biology Markup Language ('SBML') (Hucka et al. (2003) <doi:10.1093/bioinformatics/btg015>) through the bundled 'libSBML' library (Bornstein et al. (2008) <doi:10.1093/bioinformatics/btn051>). Lists a model's species, parameters, compartments, reactions, rules, events and function definitions, and converts the model into ready-to-run simulation code for 'deSolve', 'mrgsolve', 'rxode2', 'MATLAB', 'Julia' or 'ubiquity'. Models are read, not modified.

Cites work

• LibSBML: an API Library for SBML
• The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

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