RRSM with a data-dependent threshold for miRNA target prediction

DOI10.1016/J.JTBI.2013.08.002MaRDI QIDQ2632179zbMATH OpenOpenAlexWikidataFDO

Authors Wan J. Hsieh, Hsiuying Wang

Publication date 14 May 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2013.08.002

zbMATH Keywords

\(p\)-valuecorrelation analysisregression modelrelative \(R\) squared method

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

Recommendations

• Human microRNA target identification by RRSM
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• Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data
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• Predicting the fate of microRNA target genes based on sequence features

Cites work

• An \(R\)-squared measure of goodness of fit for some common nonlinear regression models
• scientific article; zbMATH DE number 1941665 (Why is no real title available?)
• Human microRNA target identification by RRSM
• Increasing microRNA target prediction confidence by the relative \(R^2\) method

Cited in

(3)

• Increasing microRNA target prediction confidence by the relative \(R^2\) method
• Ranking of microRNA target prediction scores by Pareto front analysis
• Human microRNA target identification by RRSM

Describes a project that uses

Uses Software

• SylArray
• miRTarBase
• Sylamer

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