Recent developments in computational gene recognition

MaRDI QIDQ5948247zbMATH OpenFDO

Authors Serafim Batzoglou, Bonnie Berger, Daniel J. Kleitman, Eric S. Lander, Lior Pachter

Publication date 11 November 2001

Published in Documenta Mathematica (Search for Journal in Brave)

Full work available at URL https://eudml.org/doc/224037, http://www.emis.de/journals/DMJDMV/xvol-icm/99/3Berger.MAN.html

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Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Review text

Summary: We survey recent mathematical and computational work in the field of gene recognition, focusing on the techniques that have been developed to tackle the problem of identifying protein coding regions in genes. We also present a new approach to gene recognition which is based on a variety of tools we have developed.

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(5)

• A two-stage exon recognition model based on synergetic neural network
• Annotation of protein-coding genes in fungal genomes
• Comparative study of some statistical techniques for gene identification applied to three species
• Recognition of Computationally Constructed Loci
• Analytical recognition methods for repeated structures in genomes

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