| Publication | Date of Publication | Type |
|---|
Computing with chemical reaction networks: a tutorial
Natural Computing | 2024-02-09 | Paper |
Computing with chemical reaction networks: a tutorial
Natural Computing | 2024-02-09 | Paper |
Democratic, existential, and consensus-based output conventions in stable computation by chemical reaction networks
Natural Computing | 2023-11-30 | Paper |
DNAQL: a query language for DNA sticker complexes
Natural Computing | 2023-09-08 | Paper |
The interlace polynomial and the Tutte–Martin polynomial
Handbook of the Tutte Polynomial and Related Topics | 2023-04-28 | Paper |
A characterization of circle graphs in terms of total unimodularity
European Journal of Combinatorics | 2022-04-07 | Paper |
On matrices and \(K\)-relations
Annals of Mathematics and Artificial Intelligence | 2022-02-14 | Paper |
On matrices and \(K\)-relations
Lecture Notes in Computer Science | 2020-10-26 | Paper |
Counterexamples to a conjecture of Las Vergnas
European Journal of Combinatorics | 2020-09-15 | Paper |
On the expressive power of query languages for matrices
(available as arXiv preprint) | 2020-08-06 | Paper |
A characterization of circle graphs in terms of multimatroid representations
The Electronic Journal of Combinatorics | 2020-01-27 | Paper |
A characterization of circle graphs in terms of multimatroid representations
The Electronic Journal of Combinatorics | 2020-01-27 | Paper |
Minimal output unstable configurations in chemical reaction networks and deciders
Natural Computing | 2019-07-10 | Paper |
Dominance and deficiency for Petri nets and chemical reaction networks
Natural Computing | 2019-07-10 | Paper |
Graphs associated with DNA rearrangements and their polynomials
Algebraic and Combinatorial Computational Biology | 2019-03-11 | Paper |
| Characterizing $(0,\pm 1)$-matrices with only even-rank principal submatrices in terms of skew-symmetry | 2018-11-12 | Paper |
Conditions for extinction events in chemical reaction networks with discrete state spaces
Journal of Mathematical Biology | 2018-04-11 | Paper |
Orienting transversals and transition polynomials of multimatroids
Advances in Applied Mathematics | 2018-01-11 | Paper |
Sorting by reversals and the theory of 4-regular graphs
Theoretical Computer Science | 2017-12-06 | Paper |
Isotropic matroids. III: Connectivity
The Electronic Journal of Combinatorics | 2017-07-13 | Paper |
Isotropic matroids. III: Connectivity
The Electronic Journal of Combinatorics | 2017-07-13 | Paper |
Isotropic matroids. II: Circle graphs
The Electronic Journal of Combinatorics | 2016-12-06 | Paper |
Isotropic matroids. II: Circle graphs
The Electronic Journal of Combinatorics | 2016-12-06 | Paper |
Isotropic matroids. I: Multimatroids and neighborhoods
The Electronic Journal of Combinatorics | 2016-12-06 | Paper |
Isotropic matroids. I: Multimatroids and neighborhoods
The Electronic Journal of Combinatorics | 2016-12-06 | Paper |
Robustness of expressivity in chemical reaction networks
Lecture Notes in Computer Science | 2016-11-30 | Paper |
Graph-theoretic formalization of hybridization in DNA sticker complexes
Natural Computing | 2016-03-10 | Paper |
Recombination faults in gene assembly in ciliates modeled using multimatroids
Theoretical Computer Science | 2015-12-10 | Paper |
Dominance and T-Invariants for Petri Nets and Chemical Reaction Networks
Lecture Notes in Computer Science | 2015-09-30 | Paper |
Graph Polynomials Motivated by Gene Rearrangements in Ciliates
Language, Life, Limits | 2015-02-25 | Paper |
Output Stability and Semilinear Sets in Chemical Reaction Networks and Deciders
Lecture Notes in Computer Science | 2014-10-08 | Paper |
Interlace polynomials for multimatroids and delta-matroids
European Journal of Combinatorics | 2014-08-28 | Paper |
The adjacency matroid of a graph
The Electronic Journal of Combinatorics | 2014-08-14 | Paper |
The adjacency matroid of a graph
The Electronic Journal of Combinatorics | 2014-08-14 | Paper |
The Algebra of Gene Assembly in Ciliates
Discrete and Topological Models in Molecular Biology | 2014-06-23 | Paper |
The nullity theorem for principal pivot transform
Linear Algebra and its Applications | 2014-02-19 | Paper |
Membrane systems with marked membranes
Electronic Notes in Theoretical Computer Science | 2013-12-06 | Paper |
On the inference of non-confluent NLC graph grammars
Journal of Logic and Computation | 2013-08-27 | Paper |
Nullity and loop complementation for delta-matroids
SIAM Journal on Discrete Mathematics | 2013-06-27 | Paper |
| Quaternary matroids are vf-safe | 2013-02-18 | Paper |
A type system for DNAQL
Lecture Notes in Computer Science | 2012-11-06 | Paper |
| Quaternary Bicycle Matroids and the Penrose Polynomial for Delta-Matroids | 2012-10-29 | Paper |
Pivots, determinants, and perfect matchings of graphs
Theoretical Computer Science | 2012-10-11 | Paper |
A tour of reaction systems
International Journal of Foundations of Computer Science | 2012-08-29 | Paper |
Binary symmetric matrix inversion through local complementation
Fundamenta Informaticae | 2012-06-20 | Paper |
Representing reaction systems by trees
Computation, Physics and Beyond | 2012-06-15 | Paper |
A comparison of graph-theoretic DNA hybridization models
Theoretical Computer Science | 2012-05-30 | Paper |
The group structure of pivot and loop complementation on graphs and set systems
European Journal of Combinatorics | 2011-11-29 | Paper |
Graph-theoretic formalization of hybridization in DNA sticker complexes
Lecture Notes in Computer Science | 2011-09-16 | Paper |
Reaction systems with duration
Computation, Cooperation, and Life | 2011-06-24 | Paper |
Characterizing compressibility of disjoint subgraphs with NLC grammars
Language and Automata Theory and Applications | 2011-06-03 | Paper |
On aggregation in multiset-based self-assembly of graphs
Natural Computing | 2011-05-23 | Paper |
Nullity invariance for pivot and the interlace polynomial
Linear Algebra and its Applications | 2011-04-11 | Paper |
Maximal pivots on graphs with an application to gene assembly
Discrete Applied Mathematics | 2010-11-25 | Paper |
Pivot and loop complementation on graphs and set systems
Lecture Notes in Computer Science | 2010-06-17 | Paper |
Combining overlap and containment for gene assembly in ciliates
Theoretical Computer Science | 2010-02-19 | Paper |
Extended strings and graphs for simple gene assembly
Theoretical Computer Science | 2010-02-09 | Paper |
REDUCTION GRAPHS FROM OVERLAP GRAPHS FOR GENE ASSEMBLY IN CILIATES
International Journal of Foundations of Computer Science | 2009-06-23 | Paper |
Perfectly quilted rectangular snake tilings
Theoretical Computer Science | 2009-04-16 | Paper |
Extending the Overlap Graph for Gene Assembly in Ciliates
Language and Automata Theory and Applications | 2008-11-20 | Paper |
Membrane systems with proteins embedded in membranes
Theoretical Computer Science | 2008-11-06 | Paper |
Strategies of loop recombination in ciliates
Discrete Applied Mathematics | 2008-09-10 | Paper |
The fibers and range of reduction graphs in ciliates
Acta Informatica | 2008-08-19 | Paper |
| Communication membrane systems with active symports | 2008-06-18 | Paper |
A String-Based Model for Simple Gene Assembly
Fundamentals of Computation Theory | 2008-02-26 | Paper |
From Micro to Macro: How the Overlap Graph Determines the Reduction Graph in Ciliates
Fundamentals of Computation Theory | 2008-02-26 | Paper |
Characterizing Reduction Graphs for Gene Assembly in Ciliates
Developments in Language Theory | 2007-11-28 | Paper |
Membrane Systems with External Control
Membrane Computing | 2007-09-03 | Paper |
Cycles and communicating classes in membrane systems and molecular dynamics
Theoretical Computer Science | 2007-03-27 | Paper |
| Multiset-based self-assembly of graphs | 2007-02-26 | Paper |
Reducibility of gene patterns in ciliates using the breakpoint graph.
Theoretical Computer Science | 2006-05-18 | Paper |
COMPLEXITY OF BIO-COMPUTATION: SYMBOLIC DYNAMICS IN MEMBRANE SYSTEMS
International Journal of Foundations of Computer Science | 2006-04-06 | Paper |
