Recombination faults in gene assembly in ciliates modeled using multimatroids

DOI10.1016/J.TCS.2015.08.038MaRDI QIDQ896704zbMATHOpenAlexFDO

Authors Robert Brijder

Publication date 10 December 2015

Published in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tcs.2015.08.038

zbMATH Keywords

DNA recombinationgene assembly in ciliates4-regular graphscircuit partitionsmultimatroids

Mathematics Subject Classification ID

Applications of graph theory (05C90) Genetics and epigenetics (92D10) Combinatorial aspects of matroids and geometric lattices (05B35)

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Cites work

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• scientific article; zbMATH DE number 3534506 (Why is no real title available?)
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• scientific article; zbMATH DE number 3257167 (Why is no real title available?)
• Characterizing the micronuclear gene patterns in ciliates
• Computation in living cells. Gene assembly in ciliates
• DNA recombination through assembly graphs
• Formal systems for gene assembly in ciliates.
• Gene assembly through cyclic graph decomposition
• Interlace polynomials for multimatroids and delta-matroids
• Isotropic systems
• Multimatroids I. Coverings by Independent Sets
• Multimatroids. III: Tightness and fundamental graphs
• Nullity and loop complementation for delta-matroids
• String and graph reduction systems for gene assembly in ciliates
• The adjacency matroid of a graph
• The group structure of pivot and loop complementation on graphs and set systems

Cited in

(3)

• Orienting transversals and transition polynomials of multimatroids
• Template-guided recombination for IES elimination and unscrambling of genes in stichotrichous ciliates
• Sorting by reversals and the theory of 4-regular graphs

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