Recombination faults in gene assembly in ciliates modeled using multimatroids

DOI10.1016/J.TCS.2015.08.038zbMATH Open1337.92139OpenAlexW1790919325MaRDI QIDQ896704FDOQ896704

Authors: Robert Brijder 

Publication date: 10 December 2015

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tcs.2015.08.038

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zbMATH Keywords

DNA recombinationgene assembly in ciliates4-regular graphscircuit partitionsmultimatroids

Mathematics Subject Classification ID

Applications of graph theory (05C90) Genetics and epigenetics (92D10) Combinatorial aspects of matroids and geometric lattices (05B35)

Cites Work

• Title not available (Why is that?)
• Title not available (Why is that?)
• The group structure of pivot and loop complementation on graphs and set systems
• Title not available (Why is that?)
• Gene assembly through cyclic graph decomposition
• Computation in living cells. Gene assembly in ciliates
• DNA recombination through assembly graphs
• Isotropic systems
• The adjacency matroid of a graph
• Interlace polynomials for multimatroids and delta-matroids
• Multimatroids I. Coverings by Independent Sets
• Nullity and loop complementation for delta-matroids
• Title not available (Why is that?)
• Multimatroids. III: Tightness and fundamental graphs
• Formal systems for gene assembly in ciliates.
• String and graph reduction systems for gene assembly in ciliates
• Characterizing the micronuclear gene patterns in ciliates

Cited In (3)

• Sorting by reversals and the theory of 4-regular graphs
• Orienting transversals and transition polynomials of multimatroids
• Template-guided recombination for IES elimination and unscrambling of genes in stichotrichous ciliates

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