Simple Operations for Gene Assembly

DOI10.1007/11753681_8zbMATH Open1234.68110OpenAlexW2158852652MaRDI QIDQ3618682FDOQ3618682

Authors: Ion Petre, Tero Harju, Vladimir Rogojin, Grzegorz Rozenberg 

Publication date: 2 April 2009

Published in: DNA Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/11753681_8

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Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Graph theory (including graph drawing) in computer science (68R10) Modes of computation (nondeterministic, parallel, interactive, probabilistic, etc.) (68Q10)

Cites Work

• Computation in living cells. Gene assembly in ciliates
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• Formal systems for gene assembly in ciliates.
• String and graph reduction systems for gene assembly in ciliates
• DNA Computing
• Characterizing the micronuclear gene patterns in ciliates
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• A Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals
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• How ciliates manipulate their own DNA -- A splendid example of natural computing
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Cited In (17)

• Recombination faults in gene assembly in ciliates modeled using multimatroids
• SUCCESSFUL ELEMENTARY GENE ASSEMBLY STRATEGIES
• Title not available (Why is that?)
• Three models for gene assembly in ciliates: a comparison
• Gene Assembly Algorithms for Ciliates
• A String-Based Model for Simple Gene Assembly
• Sequential vs. Parallel complexity in simple gene assembly
• Extended strings and graphs for simple gene assembly
• Patterns of simple gene assembly in ciliates
• Simple gene assembly is deterministic
• COVERS FROM TEMPLATES
• Strategies of loop recombination in ciliates
• Dependency relations between elementary intramolecular operations in gene assembly in ciliates
• Theory Is Forever
• New Computational Paradigms
• The structure of elementary strategies for gene assembly in ciliates
• Computing Through Gene Assembly

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