Simple Operations for Gene Assembly

DOI10.1007/11753681_8MaRDI QIDQ3618682zbMATH OpenOpenAlexFDO

Authors Ion Petre, Tero Harju, Vladimir Rogojin, Grzegorz Rozenberg

Publication date 2 April 2009

Published in DNA Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/11753681_8

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Graph theory (including graph drawing) in computer science (68R10) Modes of computation (nondeterministic, parallel, interactive, probabilistic, etc.) (68Q10)

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Cites work

• scientific article; zbMATH DE number 1263193 (Why is no real title available?)
• scientific article; zbMATH DE number 2156287 (Why is no real title available?)
• scientific article; zbMATH DE number 2156288 (Why is no real title available?)
• scientific article; zbMATH DE number 1568810 (Why is no real title available?)
• scientific article; zbMATH DE number 1836434 (Why is no real title available?)
• scientific article; zbMATH DE number 1408359 (Why is no real title available?)
• A Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals
• Characterizing the micronuclear gene patterns in ciliates
• Computation in living cells. Gene assembly in ciliates
• DNA Computing
• Formal systems for gene assembly in ciliates.
• How ciliates manipulate their own DNA -- A splendid example of natural computing
• String and graph reduction systems for gene assembly in ciliates

Cited in

(17)

• Recombination faults in gene assembly in ciliates modeled using multimatroids
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• scientific article; zbMATH DE number 1836434 (Why is no real title available?)
• Three models for gene assembly in ciliates: a comparison
• Gene Assembly Algorithms for Ciliates
• Sequential vs. Parallel complexity in simple gene assembly
• A String-Based Model for Simple Gene Assembly
• Extended strings and graphs for simple gene assembly
• Patterns of simple gene assembly in ciliates
• Simple gene assembly is deterministic
• Strategies of loop recombination in ciliates
• COVERS FROM TEMPLATES
• Dependency relations between elementary intramolecular operations in gene assembly in ciliates
• Theory Is Forever
• New Computational Paradigms
• The structure of elementary strategies for gene assembly in ciliates
• Computing Through Gene Assembly

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