DNA recombination through assembly graphs

DOI10.1016/J.DAM.2009.06.011MaRDI QIDQ967356zbMATH OpenOpenAlexFDO

Authors Angela Angeleska, Nataşa Jonoska, Masahico Saito

Publication date 28 April 2010

Published in Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.dam.2009.06.011

zbMATH Keywords

assembly graphscilitesDNA rearrangementspolygonal pathrecombination processsimultaneous smoothingsmoothingvirtual knot diagrams

Mathematics Subject Classification ID

Applications of graph theory (05C90) Relations of low-dimensional topology with graph theory (57M15) Genetics and epigenetics (92D10)

Recommendations

• Four-regular graphs with rigid vertices associated to DNA recombination
• DNA rearrangements through spatial graphs
• Transformations of assembly number for 4-regular graphs
• Graphs associated with DNA rearrangements and their polynomials
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Cites work

• A self-linking invariant of virtual knots
• Computation in living cells. Gene assembly in ciliates
• From Micro to Macro: How the Overlap Graph Determines the Reduction Graph in Ciliates
• Gene assembly through cyclic graph decomposition
• scientific article; zbMATH DE number 1461253 (Why is no real title available?)
• RNA-guided DNA assembly
• Virtual knot theory

Cited in

(23)

• DNA paired fragment assembly using graph theory
• Transformations of assembly number for 4-regular graphs
• Graph based analysis for gene segment organization in a scrambled genome
• Double occurrence words: their graphs and matrices
• RNA-guided DNA assembly
• Four-regular graphs with rigid vertices associated to DNA recombination
• Graph of fuzzy topographic topological mapping in relation to \(k\)-Fibonacci sequence
• Recurring patterns among scrambled genes in the encrypted genome of the ciliate \textit{Oxytricha trifallax}
• DNA rearrangements through spatial graphs
• Topological analysis of enzymatic actions on DNA polyhedral links
• scientific article; zbMATH DE number 1738644 (Why is no real title available?)
• Topological model for recombination of DNA and RNA
• Graphs associated with DNA rearrangements and their polynomials
• scientific article; zbMATH DE number 2087008 (Why is no real title available?)
• scientific article; zbMATH DE number 1836437 (Why is no real title available?)
• Invariants of graphs modeling nucleotide rearrangements
• Symbol Separation in Double Occurrence Words
• Rewriting rule chains modeling DNA rearrangement pathways
• Characterizing cancer chromosome aberration pathways using multigraphs
• Hamiltonian sets of polygonal paths in assembly graphs
• An algebraic graph neural network model for protein-ligand binding affinity prediction
• Genus ranges of 4-regular rigid vertex graphs
• Recombination faults in gene assembly in ciliates modeled using multimatroids

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