DNA recombination through assembly graphs

DOI10.1016/J.DAM.2009.06.011MaRDI QIDQ967356zbMATH OpenOpenAlexFDO

Authors Angela Angeleska, Nataşa Jonoska, Masahico Saito

Publication date 28 April 2010

Published in Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.dam.2009.06.011

zbMATH Keywords

smoothingpolygonal pathassembly graphscilitesDNA rearrangementsrecombination processsimultaneous smoothingvirtual knot diagrams

Mathematics Subject Classification ID

Applications of graph theory (05C90) Genetics and epigenetics (92D10) Relations of low-dimensional topology with graph theory (57M15)

Recommendations

• Four-regular graphs with rigid vertices associated to DNA recombination
• DNA rearrangements through spatial graphs
• Transformations of assembly number for 4-regular graphs
• Graphs associated with DNA rearrangements and their polynomials
• Gene assembly through cyclic graph decomposition

Cites work

• scientific article; zbMATH DE number 1461253 (Why is no real title available?)
• A self-linking invariant of virtual knots
• Computation in living cells. Gene assembly in ciliates
• From Micro to Macro: How the Overlap Graph Determines the Reduction Graph in Ciliates
• Gene assembly through cyclic graph decomposition
• RNA-guided DNA assembly
• Virtual knot theory

Cited in

(20)

• Graph of fuzzy topographic topological mapping in relation to \(k\)-Fibonacci sequence
• Genus ranges of 4-regular rigid vertex graphs
• Topological analysis of enzymatic actions on DNA polyhedral links
• Graph based analysis for gene segment organization in a scrambled genome
• Invariants of graphs modeling nucleotide rearrangements
• Four-regular graphs with rigid vertices associated to DNA recombination
• Topological model for recombination of DNA and RNA
• Double occurrence words: their graphs and matrices
• DNA paired fragment assembly using graph theory
• scientific article; zbMATH DE number 1738644 (Why is no real title available?)
• Rewriting rule chains modeling DNA rearrangement pathways
• scientific article; zbMATH DE number 2087008 (Why is no real title available?)
• scientific article; zbMATH DE number 1836437 (Why is no real title available?)
• RNA-guided DNA assembly
• Symbol Separation in Double Occurrence Words
• Recurring patterns among scrambled genes in the encrypted genome of the ciliate \textit{Oxytricha trifallax}
• DNA rearrangements through spatial graphs
• Transformations of assembly number for 4-regular graphs
• Graphs associated with DNA rearrangements and their polynomials
• Recombination faults in gene assembly in ciliates modeled using multimatroids

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