Topological analysis of enzymatic actions on DNA polyhedral links

DOI10.1007/S11538-011-9659-ZMaRDI QIDQ417305zbMATH OpenOpenAlexWikidataFDO

Authors Guang Hu, Ze Wang, Wen-Yuan Qiu

Publication date 14 May 2012

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL http://202.201.7.4:8080/handle/262010/76082

zbMATH Keywords

knot theorycrossing changebionanotechnologycrossing smoothingDNA polyhedra

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Three-dimensional polytopes (52B10) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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Cites work

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• scientific article; zbMATH DE number 791397 (Why is no real title available?)
• A PARTIAL ORDERING OF KNOTS AND LINKS THROUGH DIAGRAMMATIC UNKNOTTING
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• A note on the tangle model for DNA recombination
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• A topological invariant to predict the three-dimensional writhe of ideal configurations of knots and links
• Applications of knot theory. American Mathematical Society short course, San Diego, CA, USA, January 4--5, 2008
• Blueprints for dodecahedral DNA cages
• CLASSIFICATION OF TANGLE SOLUTIONS FOR INTEGRASES, A PROTEIN FAMILY THAT CHANGES DNA TOPOLOGY
• DNA duplex cage structures with icosahedral symmetry
• DNA recombination through assembly graphs
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• Self-Linking and the Gauss Integral in Higher Dimensions
• Tangle solutions for a family of DNA-rearranging proteins
• The Writhing Number of a Space Curve
• The architecture of platonic polyhedral links
• The complexity of Platonic and Archimedean polyhedral links

Cited in

(11)

• Characterizing DNA Bond Shapes Using Trajectories
• Design formalism for DNA self-assembly of polyhedral skeletons using rigid tiles
• An algebraic view of bacterial genome evolution
• Unraveling the tangled complexity of DNA: combining mathematical modeling and experimental biology to understand replication, recombination and repair
• Molecular design of DNA polyhedra based on genus
• scientific article; zbMATH DE number 5999349 (Why is no real title available?)
• Topological Process of Splitting DNA-Links
• Topological chirality of a type of DNA and protein polyhedral links
• Molecular machines from topological linkages
• Configuration of DNA polyhedra of truncated tetrahedron, cuboctahedron, truncated octahedron
• A survey on mathematical models for DNA polyhedra

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