Topological analysis of enzymatic actions on DNA polyhedral links

DOI10.1007/S11538-011-9659-ZzbMATH Open1251.92015OpenAlexW2015863340WikidataQ51573559 ScholiaQ51573559MaRDI QIDQ417305FDOQ417305

Authors: Guang Hu, Ze Wang, Wen-Yuan Qiu 

Publication date: 14 May 2012

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: http://202.201.7.4:8080/handle/262010/76082

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zbMATH Keywords

knot theorycrossing changebionanotechnologycrossing smoothingDNA polyhedra

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Three-dimensional polytopes (52B10) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

Cites Work

• A polynomial invariant for knots via von Neumann algebras
• Title not available (Why is that?)
• DNA recombination through assembly graphs
• Self-Linking and the Gauss Integral in Higher Dimensions
• The Writhing Number of a Space Curve
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• A note on the tangle model for DNA recombination
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• Blueprints for dodecahedral DNA cages
• Applications of knot theory. American Mathematical Society short course, San Diego, CA, USA, January 4--5, 2008
• A PARTIAL ORDERING OF KNOTS AND LINKS THROUGH DIAGRAMMATIC UNKNOTTING
• Extended Goldberg polyhedral links with even tangles
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• A topological invariant to predict the three-dimensional writhe of ideal configurations of knots and links
• Title not available (Why is that?)
• Tangle solutions for a family of DNA-rearranging proteins
• A topological characterization of knots and links arising from site-specific recombination
• The architecture of platonic polyhedral links
• Modeling protein-DNA complexes with tangles

Cited In (11)

• Characterizing DNA Bond Shapes Using Trajectories
• Design formalism for DNA self-assembly of polyhedral skeletons using rigid tiles
• An algebraic view of bacterial genome evolution
• Unraveling the tangled complexity of DNA: combining mathematical modeling and experimental biology to understand replication, recombination and repair
• Molecular design of DNA polyhedra based on genus
• Title not available (Why is that?)
• Topological Process of Splitting DNA-Links
• Topological chirality of a type of DNA and protein polyhedral links
• Molecular machines from topological linkages
• Configuration of DNA polyhedra of truncated tetrahedron, cuboctahedron, truncated octahedron
• A survey on mathematical models for DNA polyhedra

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