Robust classifying of prokaryotic genomes

DOI10.1016/J.COMPBIOLCHEM.2012.07.001MaRDI QIDQ2359344zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Katerina Korenblat, Alexander Bolshoy, Z. Volkovich

Publication date 28 June 2017

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2012.07.001

zbMATH Keywords

phylogenomicsjackknifingagglomerative clusteringinformation bottleneck methodgene length

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10)

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Cites work

• scientific article; zbMATH DE number 3661335 (Why is no real title available?)
• Comparison of phylogenetic trees
• Consensus n-trees
• Mathematical classification and clustering
• Multivariate Information Bottleneck
• Subtree transfer operations and their induced metrics on evolutionary trees
• The complexity of the generalized Lloyd - Max problem (Corresp.)
• Whole-genome prokaryotic clustering based on gene lengths

Cited in

(7)

• SPECTRAL CLASSIFICATION OF ARCHAEAL AND BACTERIAL GENOMES
• scientific article; zbMATH DE number 5212698 (Why is no real title available?)
• Heterogeneity of Genome and proteome content in bacteria, archaea, and eukaryotes
• A linguistic approach to classification of bacterial genomes
• On application of directons to functional classification of genes in prokaryotes
• Whole-genome prokaryotic clustering based on gene lengths
• scientific article; zbMATH DE number 1974595 (Why is no real title available?)

Describes a project that uses

Uses Software

• PHYLIP

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