rrBLUP

swMATH14006CRANrrBLUPMaRDI QIDQ25915FDOQ25915

Ridge Regression and Other Kernels for Genomic Selection

Jeffrey Endelman

Last update: 10 December 2023

Copyright license: GNU General Public License, version 3.0

Software version identifier: 4.6.2, 1.0, 1.1, 1.2, 1.6, 1.7, 1.8, 2.0, 2.1, 2.2, 2.3, 2.5, 2.7, 2.8, 3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, 3.8, 4.0, 4.1, 4.2, 4.3, 4.4, 4.5, 4.6.1, 4.6, 4.6.3

Official website: https://cran.r-project.org/web/packages/rrBLUP/index.html

Source code repository: https://github.com/cran/rrBLUP

Description

Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, <doi:10.3835/plantgenome2011.08.0024>). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.

Cites work

• Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

Cited In (20)

• factReg
• Optimization of selective phenotyping and population design for genomic prediction
• Predicting Rice phenotypes with meta and multi-target learning
• Comparing estimates of genetic variance across different relationship models
• ASReml
• BGLR
• GenSel
• PreGSF90
• hypred
• sommer
• Selection of the bandwidth parameter in a Bayesian kernel regression model for genomic-enabled prediction
• Statistical and computational challenges in whole genome prediction and genome-wide association analyses for plant and animal breeding
• Ghat
• GROAN
• RAINBOWR
• BWGS
• PopVar
• STGS
• Adjusting for spatial effects in genomic prediction
• Do spatial designs outperform classic experimental designs?

This page was built for software: rrBLUP