rrBLUP

MaRDI QIDQ25915swMATHCRANFDO

Authors Jeffrey Endelman

Last update 10 December 2023

Copyright license GNU General Public License, version 3.0

Software version identifier 4.6.2, 1.0, 1.1, 1.2, 1.6, 1.7, 1.8, 2.0, 2.1, 2.2, 2.3, 2.5, 2.7, 2.8, 3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, 3.8, 4.0, 4.1, 4.2, 4.3, 4.4, 4.5, 4.6.1, 4.6, 4.6.3

Official website https://cran.r-project.org/web/packages/rrBLUP/index.html

Source code repository https://github.com/cran/rrBLUP

Description

Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, <doi:10.3835/plantgenome2011.08.0024>). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.

Cites work

• Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

Cited in

(20)

• Optimization of selective phenotyping and population design for genomic prediction
• Predicting Rice phenotypes with meta and multi-target learning
• Comparing estimates of genetic variance across different relationship models
• ASReml
• BGLR
• GenSel
• PreGSF90
• hypred
• sommer
• Ghat
• GROAN
• RAINBOWR
• BWGS
• PopVar
• STGS
• Selection of the bandwidth parameter in a Bayesian kernel regression model for genomic-enabled prediction
• Statistical and computational challenges in whole genome prediction and genome-wide association analyses for plant and animal breeding
• factReg
• Adjusting for spatial effects in genomic prediction
• Do spatial designs outperform classic experimental designs?

This page was built for software: rrBLUP