scTenifoldNet

MaRDI QIDQ119511CRANFDO

Authors Daniel Osorio, Yan Zhong, James J. Cai, Guanxun Li, Jianhua Huang

Last update 8 October 2026

Copyright license GNU General Public License, version 2.0, GNU General Public License, version 3.0

Software version identifier 1.3, PACKAGES.rds, 1.0.0, 1.1.0, 1.2.0, 1.2.1, 1.2.2, 1.2.3, 1.2.4, 1.4, 1.4.3

Description

A workflow based on machine learning methods to construct and compare single-cell gene regulatory networks (scGRN) using single-cell RNA-seq (scRNA-seq) data collected from different conditions. Uses principal component regression, tensor decomposition, and manifold alignment, to accurately identify even subtly shifted gene expression programs. See <doi:10.1016/j.patter.2020.100139> for more details.

Cites work

• scTenifoldNet: A Machine Learning Workflow for Constructing and Comparing Transcriptome-wide Gene Regulatory Networks from Single-Cell Data

Cited in

(1)

• scTenifoldKnk

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