Several appropriate background distributions for entropy-based protein sequence conservation measures

DOI10.1016/J.JTBI.2009.09.030MaRDI QIDQ1629023zbMATH OpenOpenAlexWikidataFDO

Authors Yongchao Dou, Xiaoqi Zheng, Jun Wang

Publication date 11 December 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2009.09.030

zbMATH Keywords

functionally important residuesintegratedrelative entropy modelsymmetric

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Recommendations

• On the entropy of protein families
• Stochastic assessment of protein databases by generalized entropy measures
• Statistical Methods for Identifying Conserved Residues in Multiple Sequence Alignment
• scientific article; zbMATH DE number 1930381
• A generalized approach for protein design based on the relative entropy

Cites work

• Divergence measures based on the Shannon entropy
• scientific article; zbMATH DE number 1579275 (Why is no real title available?)
• scientific article; zbMATH DE number 107482 (Why is no real title available?)

Cited in

(5)

• Estimating polypeptide \(\alpha\)-carbon distances from multiple sequence alignments
• A generalized approach for protein design based on the relative entropy
• On the entropy of protein families
• Finding important sites in protein sequences
• Statistical Methods for Identifying Conserved Residues in Multiple Sequence Alignment

Describes a project that uses

Uses Software

• AL2CO
• H2r

This page was built for publication: Several appropriate background distributions for entropy-based protein sequence conservation measures

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1629023)