siRNA design. Methods and protocols

DOI10.1007/978-1-62703-119-6MaRDI QIDQ351523zbMATH OpenOpenAlexFDO

Authors

Publication date 5 July 2013

Published in Methods in Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-1-62703-119-6

zbMATH Keywords

plant virusesvirus immunitytransacting siRNAstargetsmall interfering RNAssiRNA screeningsiRNA designssecondary small interfering RNAsRNAi reagentsRNAiRNA interferenceartificial miRNA (amiRNA)off target silencing effectgene therapygene silencingfork like siRNAextended short hairpin RNA (e-shRNA)endoribonuclease siRNA (e-siRNA)design of synthetic short RNAscombinatorial RNAibi-functional short hairpin RNA (bi-shRNA)asymmetric shorter duplex RNA (asiRNA)

Mathematics Subject Classification ID

Research exposition (monographs, survey articles) pertaining to biology (92-02) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Recommendations

• MicroRNA protocols
• Combinatorial RNA design: designability and structure-approximating algorithm
• Using radial basis function networks and significance testing to select effective siRNA sequences
• Selecting effective siRNA sequences based on the self-organizing map and statistical techniques
• Regulatory RNAs. Basics, methods and applications

Cited in

(4)

• Using radial basis function networks and significance testing to select effective siRNA sequences
• Selecting effective siRNA target sequences by using Bayes' theorem
• Regulatory RNAs. Basics, methods and applications
• Computational Science – ICCS 2005

This page was built for publication: siRNA design. Methods and protocols

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q351523)