Simulating Protein Motions with Rigidity Analysis

DOI10.1007/11732990_33MaRDI QIDQ3596255zbMATH OpenOpenAlexFDO

Authors Shawna Thomas, Xinyu Tang, Lydia Tapia, Nancy M. Amato

Publication date 30 August 2007

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/11732990_33

zbMATH Keywords

biochemical processesprotein motionsrigidity analysis

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

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Cited in

(20)

• Low frequency motion in proteins. Comparison of normal mode and molecular dynamics of Streptomyces Griseus Protease A
• Stiffening of flexible SUMO1 protein upon peptide-binding: analysis with anisotropic network model
• Simulation of conformational changes occurring when a protein interacts with its receptor
• scientific article; zbMATH DE number 1595162 (Why is no real title available?)
• How does symmetry impact the flexibility of proteins?
• Application of kinematics tools in the study of internal mobility of protein molecules
• Incremental Map Generation (IMG)
• A Kinematic Approach to Calculate Protein Motion Paths
• Protein loop dynamics are complex and depend on the motions of the whole protein
• Normal mode analysis of molecular motions in curvilinear coordinates on a non-Eckart body-frame: an application to protein torsion dynamics
• Geometric analysis characterizes molecular rigidity in generic and non-generic protein configurations
• Penalized multidimensional fitting for protein movement detection
• Brownian dynamics simulation for protein folding and binding
• A path planning-based study of protein folding with a case study of hairpin formation in protein G and L
• Exploration of conformations for an intrinsically disordered protein
• Collective motions in protein structures: applications of elastic network models built from electron density distributions
• Kinematic mobility analysis of peptide based nano-linkages
• A motion planning approach to studying molecular motions
• Sampling conformation space to model equilibrium fluctuations in proteins
• An algorithmic approach to the identification of rigid domains in proteins

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