Provides functions for defining mixed graphs containing three types of edges, directed, undirected and bi-directed, with possibly multiple edges. These graphs are useful because they capture fundamental independence structures in multivariate distributions and in the induced distributions after marginalization and conditioning. The package is especially concerned with Gaussian graphical models for (i) ML estimation for directed acyclic graphs, undirected and bi-directed graphs and ancestral graph models (ii) testing several conditional independencies (iii) checking global identification of DAG Gaussian models with one latent variable (iv) testing Markov equivalences and generating Markov equivalent graphs of specific types.
- High dimensional sparse covariance estimation via directed acyclic graphs
- Foundations of data analysis with R. An application oriented introduction.
- Distortion of effects caused by indirect confounding
- Bayesian networks. With examples in R
- FSA
- multilevel
- moments
- perturb
- R.matlab
- RExcelInstaller
- xlsReadWrite
- deal
- pcalg
- corpcor
- gRbase
- bdsmatrix
- entropy
- hmmm
- causaleffect
- GraphicalModels
- D2C
- fastM
- dagitty
- sglasso
- pkgbuild
- pkgconfig
- CAM
- diffusr
- gRim
- TNTool
- varbvs
- InvariantCausalPrediction
- greedyBAPs
- cmm
- simPATHy
- treatSens
- dynamicGraph
- MIM
- RAMpath
- tframe
- tfplot
- GraphicalModelsMLE
- piecewiseSEM
- SEMgraph
- LinearCovarianceModels.jl
- profileModel
- Partial inversion for linear systems and partial closure of independence graphs
- MoTBFs
- phylopath
- TGS
- pcgen
- HeteroGGM
- Matrix representations and independencies in directed acyclic graphs
- Rejoinder on: Sequences of regressions and their independences
- An empirical study of testing independencies in Bayesian networks using rp-separation
- loggle
- robFitConGraph
- Distributional equivalence and structure learning for bow-free acyclic path diagrams
- Order-independent constraint-based causal structure learning
- Estimating high-dimensional intervention effects from observational data
- Covariance chains
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