pcalg
swMATH6072CRANpcalgMaRDI QIDQ18210FDOQ18210
Methods for Graphical Models and Causal Inference
Markus Kalisch, Martin Maechler, Alain Hauser
Last update: 12 February 2024
Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0
Software version identifier: 2.7-8, 0.1-3, 0.1-4, 0.1-5, 0.1-6, 0.1-7, 0.1-8, 0.1-9, 1.0-0, 1.0-2, 1.1-2, 1.1-4, 1.1-5, 1.1-6, 2.0-1, 2.0-2, 2.0-3, 2.0-10, 2.2-0, 2.2-2, 2.2-3, 2.2-4, 2.4-2, 2.4-3, 2.4-5, 2.5-0, 2.6-0, 2.6-2, 2.6-5, 2.6-6, 2.6-7, 2.6-8, 2.6-9, 2.6-10, 2.6-11, 2.6-12, 2.7-0, 2.7-1, 2.7-2, 2.7-3, 2.7-4, 2.7-5, 2.7-6, 2.7-7, 2.7-9, 2.7-10, 2.7-11
Official website: http://cran.r-project.org/web/packages/pcalg/
Source code repository: https://github.com/cran/pcalg
Functions for causal structure learning and causal inference using graphical models. The main algorithms for causal structure learning are PC (for observational data without hidden variables), FCI and RFCI (for observational data with hidden variables), and GIES (for a mix of data from observational studies (i.e. observational data) and data from experiments involving interventions (i.e. interventional data) without hidden variables). For causal inference the IDA algorithm, the Generalized Backdoor Criterion (GBC), the Generalized Adjustment Criterion (GAC) and some related functions are implemented. Functions for incorporating background knowledge are provided.
Cited In (only showing first 100 items - show all)
- Causal discovery in heavy-tailed models
- A uniformly consistent estimator of causal effects under the \(k\)-triangle-faithfulness assumption
- Two optimal strategies for active learning of causal models from interventional data
- Geometry of the faithfulness assumption in causal inference
- A survey on causal discovery: theory and practice
- Compatible priors for model selection of high-dimensional Gaussian DAGs
- Learning high-dimensional directed acyclic graphs with latent and selection variables
- Improving Bayesian network local structure learning via data-driven symmetry correction methods
- Learning causal structure from mixed data with missing values using Gaussian copula models
- High-dimensional consistency in score-based and hybrid structure learning
- Hypersurfaces and their singularities in partial correlation testing
- Testing covariates in high dimension linear regression with latent factors
- Causal statistical inference in high dimensions
- A focused information criterion for graphical models
- Treelets -- an adaptive multi-scale basis for sparse unordered data
- Faithfulness and learning hypergraphs from discrete distributions
- Testing a single regression coefficient in high dimensional linear models
- Estimating bounds on causal effects in high-dimensional and possibly confounded systems
- A local method for identifying causal relations under Markov equivalence
- A Gibbs sampler for learning DAGs
- \(\mathsf{PenPC}\): a two-step approach to estimate the skeletons of high-dimensional directed acyclic graphs
- Bayesian network learning via topological order
- Adaptive estimation of covariance matrices via Cholesky decomposition
- Estimation of positive definite \(M\)-matrices and structure learning for attractive Gaussian Markov random fields
- Finding optimal Bayesian network given a super-structure
- Determining full conditional independence by low-order conditioning
- Title not available (Why is that?)
- Bayesian networks. With examples in R
- Robust Causal Structure Learning with Some Hidden Variables
- Structure learning in Bayesian networks using regular vines
- Entropy inference and the James-Stein estimator, with application to nonlinear gene association networks
- Objective Bayesian search of Gaussian directed acyclic graphical models for ordered variables with non-local priors
- Separators and adjustment sets in causal graphs: complete criteria and an algorithmic framework
- High-dimensional Gaussian model selection on a Gaussian design
- Learning marginal AMP chain graphs under faithfulness revisited
- Learning causal graphs with latent confounders in weak faithfulness violations
- Title not available (Why is that?)
- A generalized back-door criterion
- Marginal integration for nonparametric causal inference
- A Bayesian graphical model for ChIP-Seq data on histone modifications
- Scalable multi-output label prediction: from classifier chains to classifier trellises
- cuPC
- causal-learn
- phsl
- Modelling an energy market with Bayesian networks for non-normal data
- Title not available (Why is that?)
- Large-scale local causal inference of gene regulatory relationships
- Knowledge transfer for causal discovery
- Bayesian network structural learning from complex survey data: a resampling based approach
- A hybrid Bayesian network learning method for constructing gene networks
- The three faces of faithfulness
- Copula directed acyclic graphs
- Causal network reconstruction from time series: from theoretical assumptions to practical estimation
- Reversible MCMC on Markov equivalence classes of sparse directed acyclic graphs
- Causal inference in partially linear structural equation models
- clustNet
- SID
- Uniform random generation of large acyclic digraphs
- Greedy Causal Discovery Is Geometric
- From dependency to causality: a machine learning approach
- Ultra-scalable and efficient methods for hybrid observational and experimental local causal pathway discovery
- Inferring gene regulatory networks by an order independent algorithm using incomplete data sets
- Inferring gene regulatory networks by PCA-CMI using Hill climbing algorithm based on MIT score and SORDER method
- Fast causal orientation learning in directed acyclic graphs
- Learning instrumental variables with structural and non-Gaussianity assumptions
- Efficient Learning of Quadratic Variance Function Directed Acyclic Graphs via Topological Layers
- NlinTS
- Efficient Sampling and Structure Learning of Bayesian Networks
- Copula grow-shrink algorithm for structural learning
- Inferring sparse Gaussian graphical models with latent structure
- BCDAG
- Estimating high-dimensional directed acyclic graphs with the PC-algorithm
- High dimensional sparse covariance estimation via directed acyclic graphs
- Sparse permutation invariant covariance estimation
- Bayesian networks. With examples in R
- Structural intervention distance for evaluating causal graphs
- Concave penalized estimation of sparse Gaussian Bayesian networks
- Partitioned hybrid learning of Bayesian network structures
- Estimating causal structure using conditional DAG models
- ggm
- deal
- gRc
- NETWORKINFERENCE
- GCCA
- corpcor
- graph
- gRbase
- HUGIN
- catnet
- bnlearn
- gRain
- Rgraphviz
- huge
- Separoids
- PleioGRiP
- rbmn
- causaleffect
- reldist
- TETRAD
- SynTReN
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