pcalg
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Pcalg
Functions for causal structure learning and causal inference using graphical models. The main algorithms for causal structure learning are PC (for observational data without hidden variables), FCI and RFCI (for observational data with hidden variables), and GIES (for a mix of data from observational studies (i.e. observational data) and data from experiments involving interventions (i.e. interventional data) without hidden variables). For causal inference the IDA algorithm, the Generalized Backdoor Criterion (GBC), the Generalized Adjustment Criterion (GAC) and some related functions are implemented. Functions for incorporating background knowledge are provided.
Cited in
(only showing first 100 items - show all)- BCDAG
- High dimensional sparse covariance estimation via directed acyclic graphs
- Sparse permutation invariant covariance estimation
- Concave penalized estimation of sparse Gaussian Bayesian networks
- Inferring large graphs using \(\ell_1\)-penalized likelihood
- scientific article; zbMATH DE number 7255130 (Why is no real title available?)
- Structural intervention distance for evaluating causal graphs
- Partitioned hybrid learning of Bayesian network structures
- \(\ell_{0}\)-penalized maximum likelihood for sparse directed acyclic graphs
- Penalized likelihood methods for estimation of sparse high-dimensional directed acyclic graphs
- Penalized estimation of directed acyclic graphs from discrete data
- ggm
- deal
- gRc
- NETWORKINFERENCE
- GCCA
- corpcor
- graph
- gRbase
- HUGIN
- catnet
- bnlearn
- gRain
- Rgraphviz
- huge
- Separoids
- PleioGRiP
- rbmn
- causaleffect
- reldist
- TETRAD
- SynTReN
- TikzDevice
- BDAGL
- D2C
- gRapHD
- BDgraph
- MXM
- DirectLiNGAM
- RHugin
- dagitty
- Estimating causal structure using conditional DAG models
- CAM
- ParallelPC
- Tigramite
- R/qtl
- netgwas
- sparsebn
- NESTOR
- GeneNetWeaver
- InvariantCausalPrediction
- GADAG
- NARROMI
- treatSens
- MRPC
- varrank
- PenPC
- MIM
- ssgraph
- CAMERA
- abn
- BiDAG
- rcausal
- BayesNetBP
- RAIcode
- Causal Discovery
- JCI
- Inferring sparse Gaussian graphical models with latent structure
- scientific article; zbMATH DE number 7306917 (Why is no real title available?)
- BENEDICT
- trigger
- DREAM4
- High-dimensional structure estimation in Ising models: local separation criterion
- Estimating high-dimensional intervention effects from observational data
- micd
- tpc
- Bayesian networks. With examples in R
- Complete graphical characterization and construction of adjustment sets in Markov equivalence classes of ancestral graphs
- causalDisco
- NetCoupler
- eff2
- High-dimensional Ising model selection using \(\ell _{1}\)-regularized logistic regression
- Estimating high-dimensional directed acyclic graphs with the PC-algorithm
- mDAG
- pcgen
- Testing conditional independence in supervised learning algorithms
- clustNet
- SID
- Greedy Causal Discovery Is Geometric
- From dependency to causality: a machine learning approach
- Ultra-scalable and efficient methods for hybrid observational and experimental local causal pathway discovery
- Copula grow-shrink algorithm for structural learning
- Inferring gene regulatory networks by an order independent algorithm using incomplete data sets
- Efficient Sampling and Structure Learning of Bayesian Networks
- Efficient Learning of Quadratic Variance Function Directed Acyclic Graphs via Topological Layers
- Uniform random generation of large acyclic digraphs
- Learning instrumental variables with structural and non-Gaussianity assumptions
- Fast causal orientation learning in directed acyclic graphs
- NlinTS
- Inferring gene regulatory networks by PCA-CMI using Hill climbing algorithm based on MIT score and SORDER method
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