bnlearn
Bayesian network structure learning, parameter learning and inference. This package implements constraint-based (PC, GS, IAMB, Inter-IAMB, Fast-IAMB, MMPC, Hiton-PC, HPC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing and Tabu Search) and hybrid (MMHC, RSMAX2, H2PC) structure learning algorithms for discrete, Gaussian and conditional Gaussian networks, along with many score functions and conditional independence tests. The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are also implemented. Some utility functions (model comparison and manipulation, random data generation, arc orientation testing, simple and advanced plots) are included, as well as support for parameter estimation (maximum likelihood and Bayesian) and inference, conditional probability queries, cross-validation, bootstrap and model averaging. Development snapshots with the latest bugfixes are available from <https://www.bnlearn.com/>.
- criticality
- MoTBFs
- Testing conditional independence in supervised learning algorithms
- rPACI
- GroupBN
- bnviewer
- PGM_PyLib
- BayesianGLasso
- BigQuic
- glassoFast
- cuPC
- phsl
- causal-learn
- BCDAG
- dbnlearn
- BNrich
- Penalized estimation of directed acyclic graphs from discrete data
- Matilda
- mDAG
- bnpa
- StratifiedBalancing
- r.blip
- BNSL
- BayesianNetwork
- wiseR
- SELF
- Structure learning in Bayesian networks using regular vines
- Gene regulatory networks. Methods and protocols
- Analyzing dependent data with vine copulas. A practical guide with R
- Online estimation of discrete, continuous, and conditional joint densities using classifier chains
- deal
- SIMoNe
- penalized
- pcalg
- gRc
- WGCNA
- AgenaRisk
- BNT
- HUGIN
- High-dimensional consistency in score-based and hybrid structure learning
- bnsoft
- VineCopula
- catnet
- relaimpo
- Rgraphviz
- EDISON
- graph
- gRain
- rsprng
- huge
- A survey of statistical learning techniques as applied to inexpensive pediatric obstructive sleep apnea data
- A Bayesian hierarchical score for structure learning from related data sets
- Knowledge transfer for causal discovery
- Greedy structure learning from data that contain systematic missing values
- A geometric characterization of sensitivity analysis in monomial models
- A survey on causal discovery: theory and practice
- Effective and efficient structure learning with pruning and model averaging strategies
- Disentangling relationships in symptom networks using matrix permutation methods
- Finding optimal triangulations parameterized by edge clique cover
- Partitioned hybrid learning of Bayesian network structures
- rbmn
- PleioGRiP
- gRbase
- Large-scale empirical validation of Bayesian network structure learning algorithms with noisy data
- A decomposition-based algorithm for learning the structure of multivariate regression chain graphs
- QSARdata
- Marginal information for structure learning
- Learning Bayesian networks with local structure, mixed variables, and exact algorithms
- Who learns better Bayesian network structures: accuracy and speed of structure learning algorithms
- ebdbNet
- Improving Bayesian network local structure learning via data-driven symmetry correction methods
- Learning Bayesian networks from big data with greedy search: computational complexity and efficient implementation
- Improving the efficiency of genomic selection
- Bayesian network modeling of the consensus between experts: an application to neuron classification
- Exact tests for singular network data
- \textit{Graph\_sampler}: a simple tool for fully Bayesian analyses of DAG-models
- A novel Chow-Liu algorithm and its application to gene differential analysis
- ADTool
- AttackTree
- TETRAD
- Hierarchical estimation of parameters in Bayesian networks
- SynTReN
- Netica
- GeNIe
- La Jolla Difference Set
- BDAGL
- D2C
- gRapHD
- qgraph
- ddepn
- breastCancerVDX
- What is an optimal value of \(k\) in \(k\)-fold cross-validation in discrete Bayesian network analysis?
- BDgraph
- VIBES
- DirectLiNGAM
- From dependency to causality: a machine learning approach
- Machine learning approaches for early DRG classification and resource allocation
- RHugin
- PSICOV
- Enrichr
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