bnlearn
Bayesian network structure learning, parameter learning and inference. This package implements constraint-based (PC, GS, IAMB, Inter-IAMB, Fast-IAMB, MMPC, Hiton-PC, HPC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing and Tabu Search) and hybrid (MMHC, RSMAX2, H2PC) structure learning algorithms for discrete, Gaussian and conditional Gaussian networks, along with many score functions and conditional independence tests. The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are also implemented. Some utility functions (model comparison and manipulation, random data generation, arc orientation testing, simple and advanced plots) are included, as well as support for parameter estimation (maximum likelihood and Bayesian) and inference, conditional probability queries, cross-validation, bootstrap and model averaging. Development snapshots with the latest bugfixes are available from <https://www.bnlearn.com/>.
- Modern psychometrics with R
- Model-preserving sensitivity analysis for families of Gaussian distributions
- Gene regulatory networks. Methods and protocols
- Greedy structure learning from data that contain systematic missing values
- A geometric characterization of sensitivity analysis in monomial models
- A survey on causal discovery: theory and practice
- Effective and efficient structure learning with pruning and model averaging strategies
- Causal network learning with non-invertible functional relationships
- Improving Bayesian network local structure learning via data-driven symmetry correction methods
- High-dimensional consistency in score-based and hybrid structure learning
- \textit{Graph\_sampler}: a simple tool for fully Bayesian analyses of DAG-models
- Analyzing dependent data with vine copulas. A practical guide with R
- scientific article; zbMATH DE number 7307465 (Why is no real title available?)
- Understanding the epidemiology of foreign body injuries in children using a data-driven Bayesian network
- Online estimation of discrete, continuous, and conditional joint densities using classifier chains
- AMP chain graphs: minimal separators and structure learning algorithms
- Bayesian networks. With examples in R
- A focused information criterion for graphical models
- Probabilistic graphical modelling of causal effects among the occurrences of transcription factors in DNA sequence
- Concave penalized estimation of sparse Gaussian Bayesian networks
- Large-scale empirical validation of Bayesian network structure learning algorithms with noisy data
- Partitioned hybrid learning of Bayesian network structures
- Uniform random generation of large acyclic digraphs
- Learning Bayesian networks with local structure, mixed variables, and exact algorithms
- The reduced PC-algorithm: improved causal structure learning in large random networks
- Identifiability of additive noise models using conditional variances
- Bayesian networks in R. With applications in systems biology
- An information theoretic approach to pedigree reconstruction
- Disentangling relationships in symptom networks using matrix permutation methods
- From dependency to causality: a machine learning approach
- Bayesian networks and the assessment of universities' value added
- Improving the efficiency of genomic selection
- Machine learning approaches for early DRG classification and resource allocation
- DAG-based attack and defense modeling: don't miss the forest for the attack trees
- Bayesian networks. With examples in R
- Matilda
- deal
- gRc
- pcalg
- penalized
- SIMoNe
- AgenaRisk
- BNT
- WGCNA
- graph
- gRbase
- entropy
- HUGIN
- bnsoft
- catnet
- EDISON
- gRain
- relaimpo
- Rgraphviz
- rsprng
- huge
- VineCopula
- PleioGRiP
- rbmn
- QSARdata
- ebdbNet
- ADTool
- AttackTree
- TETRAD
- SynTReN
- GeNIe
- Netica
- La Jolla Difference Set
- BDAGL
- D2C
- gRapHD
- breastCancerVDX
- ddepn
- qgraph
- BDgraph
- DirectLiNGAM
- VIBES
- RHugin
- ARACNE
- PSICOV
- Enrichr
- MaCH
- AICcmodavg
- TRANSWESD
- MulVAL
- MuMIn
- pchc
- JASPAR
- pacotest
- ParallelPC
- Graph_sampler
- R/qtl
- netgwas
- sparsebn
- ADEPTS
- RRE
- SeaMonster
- SecurITree
- GeneNetWeaver
- CGBayesNets
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