Cited in
(41)- Combining stochastic and deterministic approaches within high efficiency molecular simulations
- Folding of SAM-II riboswitch explored by replica-exchange molecular dynamics simulation
- A generalized non-iterative matrix method for constraint molecular dynamics simulations
- A meshless discretization method for Markov state models applied to explicit water peptide folding simulations
- Why does \(\beta \)-secretase zymogen possess catalytic activity? Molecular modeling and molecular dynamics simulation studies
- Molecular dynamics simulation of HIV fusion inhibitor T-1249: insights on peptide-lipid interac\-tion
- A data-driven framework for sparsity-enhanced surrogates with arbitrary mutually dependent randomness
- P-SHAKE: a quadratically convergent SHAKE in \(O(n^2)\)
- A semi-analytical approach to molecular dynamics
- Molecular dynamics. With deterministic and stochastic numerical methods
- GSHMC
- WIGGLE
- Gromacs
- PLUMED
- ZIBgridfree
- GROMOS
- Macrodox
- AutoDock Vina
- NAMD2
- PyMOL
- SETTLE
- PROCHECK
- I-TASSER
- SWISS-MODEL
- \textit{In silico} analysis of \textit{plasmodium falciparum} CDPK5 protein through molecular modeling, docking and dynamics
- MMM2D
- VMD
- CHARMM-GUI
- P-LINCS
- Molecular modeling, simulation and virtual screening of ribosomal phosphoprotein P1 from \textit{Plasmodium falciparum}
- Molecular modeling and molecular dynamics simulations of GPI 14 in \textit{Leishmania major}: insight into the catalytic site for active site directed drug design
- Q-SiteFinder
- WIGGLE: a new constrained molecular dynamics algorithm in Cartesian coordinates
- Data-driven molecular modeling with the generalized Langevin equation
- A sparse Markov chain approximation of LQ-type stochastic control problems.
- Generalized Fickian approach for phase separating fluid mixtures in smoothed particle hydrodynamics
- B-spline tight frame based force matching method
- scientific article; zbMATH DE number 5181817 (Why is no real title available?)
- An effective bead-spring model for polymer simulation
- A comparative molecular dynamics-phase-field modeling approach to brittle fracture
- Mechanics of water pore formation in lipid membrane under electric field
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