Folding of SAM-II riboswitch explored by replica-exchange molecular dynamics simulation

DOI10.1016/j.jtbi.2014.10.022zbMath1314.92120OpenAlexW1976511606WikidataQ86117549 ScholiaQ86117549MaRDI QIDQ2351347

Xu Xue, Wang Yongjun, Li Zhihong

Publication date: 23 June 2015

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2014.10.022

zbMATH Keywords

bacteriariboswitchfolding dynamicsremd

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Uses Software

• Gromacs
• LINCS

Cites Work

• Equation of State Calculations by Fast Computing Machines