mvMORPH

swMATH20088CRANmvMORPHMaRDI QIDQ31910

Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data

Julien Clavel

Last update: 9 December 2023

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 1.1.7, 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.0.5, 1.0.6, 1.0.7, 1.0.8, 1.0.9, 1.0, 1.1.0, 1.1.1, 1.1.2, 1.1.3, 1.1.4, 1.1.5, 1.1.6, 1.1.8, 1.1.9

Source code repository: https://github.com/cran/mvMORPH

Description

Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees and time series. 'mvMORPH' also proposes high-dimensional multivariate comparative tools (linear models using Generalized Least Squares and multivariate tests) based on penalized likelihood. See Clavel et al. (2015) <doi:10.1111/2041-210X.12420>, Clavel et al. (2019) <doi:10.1093/sysbio/syy045>, and Clavel & Morlon (2020) <doi:10.1093/sysbio/syaa010>.

Cites work

• mv morph : an r package for fitting multivariate evolutionary models to morphometric data
• A Penalized Likelihood Framework for High-Dimensional Phylogenetic Comparative Methods and an Application to New-World Monkeys Brain Evolution
• Reliable Phylogenetic Regressions for Multivariate Comparative Data: Illustration with the MANOVA and Application to the Effect of Diet on Mandible Morphology in Phyllostomid Bats

Related Items (5)

Phylogenetic effective sample size ⋮ Efficient Bayesian inference of general Gaussian models on large phylogenetic trees ⋮ Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts ⋮ RPANDA ⋮ ratematrix

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