A collection of epidemic/network-related tools. Simulates transmission of diseases through contact networks. Performs Bayesian inference on network and epidemic parameters, given epidemic data.
Cited in
(35)- An approximate likelihood perspective on ABC methods
- The stochastic SEIR model before extinction: computational approaches
- A dynamic individual-based model for high-resolution ant interactions
- RladyBug
- Surveillance
- ergm
- SDE Toolbox
- Bergm
- EpiModel
- dynsbm
- abcrf
- epiABC
- R0
- EpiEstim
- abc-sde
- CosmoPMC
- msBayes
- onesamp
- EpiDynamics
- PopABC
- REJECTOR
- Serial SimCoal
- IcyTree
- synlik
- BioSimulator.jl
- EpiILMCT
- Pathogen.jl
- FAVITES
- abcpmc
- A semiparametric Bayesian approach to epidemics, with application to the spread of the coronavirus MERS in South Korea in 2015
- Model-based clustering of large networks
- The transmission process: a combinatorial stochastic process for the evolution of transmission trees over networks
- A network epidemic model for online community commissioning data
- Introduction to the special issue on data science for COVID-19
- Epidemiologic network inference
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