locuszoomr

Gene Locus Plot with Gene Annotations

Last update: 17 February 2024

Copyright license: GNU General Public License

Software version identifier: 0.1.1, 0.1.2, 0.1.3, 0.2.0, 0.2.1

Description

Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.

This page was built for software: locuszoomr