sccore
Core Utilities for Single-Cell RNA-Seq
Viktor Petukhov, Peter Kharchenko, Evan Biederstedt, Rasmus Rydbirk
Last update: 23 February 2024
Software version identifier: 1.0.3, 0.1.0, 0.1.1, 0.1.2, 0.1.3, 1.0.0, 1.0.1, 1.0.2, 1.0.4, 1.0.5
Copyright license: GNU General Public License, version 3.0
Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.
