alakazam

CRANalakazamMaRDI QIDQ70956FDOQ70956

Immunoglobulin Clonal Lineage and Diversity Analysis

Namita Gupta, Jason A. vander Heiden, Ruoyi Jiang, Susanna Marquez, Steven H. Kleinstein, Julian Zhou, Nima Nouri, Kenneth Hoehn

Last update: 30 September 2023

Copyright license: GNU Affero General Public License, version 3.0

Software version identifier: 1.2.1, 0.2.2, 0.2.3, 0.2.4, 0.2.5, 0.2.6, 0.2.7, 0.2.8, 0.2.9, 0.2.10, 0.2.11, 0.3.0, 1.0.0, 1.0.1, 1.0.2, 1.1.0, 1.2.0, 1.2.1, 1.3.0

Description

Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.

Cites work

• Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data
• B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes

Cited In (7)

• shazam
• ogrdbstats
• tigger
• rabhit
• dowser
• UniprotR
• scoper

This page was built for software: alakazam