grandR

Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Last update: 15 February 2024

Copyright license: Apache License

Software version identifier: 0.2.1, 0.2.2, 0.2.0, 0.2.5

Description

Nucleotide conversion sequencing experiments have been developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such experiments require specialized tools for primary processing such as GRAND-SLAM, (see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for downstream analyses. 'grandR' provides a comprehensive toolbox for quality control, kinetic modeling, differential gene expression analysis and visualization of such data.

Cites work

Dissecting newly transcribed and old RNA using GRAND-SLAM

This page was built for software: grandR